Difference between revisions of "BsrI"

From SubtiWiki
Jump to: navigation, search
(New page: * '''Description:''' small RNA <br/><br/> {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''bsrI'' |- |style="background:#ABCD...)
 
 
(9 intermediate revisions by 3 users not shown)
Line 16: Line 16:
 
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  bp
 
|style="background:#ABCDEF;" align="center"| '''Gene length''' ||  bp
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' ||  
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sufC]]'', ''[[yurZ]]''
 
|-
 
|-
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt    Gene sequence      (+200bp)  ]'''  
 
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt    Gene sequence      (+200bp)  ]'''  
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:genE_context.gif]]
 +
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
 
|}
 
|}
Line 29: Line 30:
  
 
<br/><br/><br/><br/><br/>
 
<br/><br/><br/><br/><br/>
 +
= [[Categories]] containing this gene/protein =
 +
{{SubtiWiki category|[[ncRNA]]}}
 +
 +
= This gene is a member of the following [[regulons]] =
 +
 +
 
=The gene=
 
=The gene=
  
 
=== Basic information ===
 
=== Basic information ===
  
* '''Coordinates:'''
+
* '''Locus tag:'''
  
 
===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=?&redirect=T ?]
  
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
Line 46: Line 54:
  
 
=== Additional information===
 
=== Additional information===
 +
 +
  
  
Line 77: Line 87:
 
=References=
 
=References=
  
# Saito S, Kakeshita H, Nakamura K (2009) Novel small RNA-encoding genes in the intergenic regions of ''Bacillus subtilis''. ''Gene'' '''428:''' 2-8. [http://www.ncbi.nlm.nih.gov/sites/entrez/18948176 PubMed]
+
<pubmed>18948176, </pubmed>
 +
 
 +
[[Category:small RNA]]

Latest revision as of 15:23, 2 April 2014

  • Description: small RNA

Gene name bsrI
Synonyms
Essential no
Product small RNA
Function unknown
Gene length bp
Immediate neighbours sufC, yurZ
Gene sequence (+200bp)
Genetic context
File:GenE context.gif
This image was kindly provided by SubtiList








Categories containing this gene/protein

ncRNA

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag:

Phenotypes of a mutant

Database entries

  • BsubCyc: ?
  • DBTBS entry: no entry
  • SubtiList entry: no entry
  • Structure:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:


Labs working on this gene/RNA

Kouji Nakamura, Tsukuba, University, Japan

Your additional remarks

References

Shinichi Saito, Hiroshi Kakeshita, Kouji Nakamura
Novel small RNA-encoding genes in the intergenic regions of Bacillus subtilis.
Gene: 2009, 428(1-2);2-8
[PubMed:18948176] [WorldCat.org] [DOI] (P p)