Difference between revisions of "BsrF"

From SubtiWiki
Jump to: navigation, search
Line 6: Line 6:
 
|''bsrF''
 
|''bsrF''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''SR2 ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
Line 50: Line 50:
 
=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:'''  
+
* '''Operon:''' ''bsrF''
  
* '''Sigma factor:'''  
+
* '''Sigma factor:''' [[SigA]]
  
* '''Regulation:'''  
+
* '''Regulation:''' weakly activated by [[CodY]]
  
* '''Regulatory mechanism:'''  
+
* '''Regulatory mechanism:''' [[CodY]]: transcription activation
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  
Line 77: Line 77:
 
=References=
 
=References=
  
<pubmed>18948176, </pubmed>
+
<pubmed>18948176, 19542274 </pubmed>

Revision as of 06:03, 25 June 2009

  • Description: small RNA

Gene name bsrF
Synonyms SR2
Essential no
Product small RNA
Function unknown
Gene length bp
Immediate neighbours yobO, csaA
Gene sequence (+200bp)
Genetic context
File:GenE context.gif








The gene

Basic information

  • Locus tag:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: no entry
  • Structure:

Additional information

Expression and regulation

  • Operon: bsrF
  • Regulation: weakly activated by CodY
  • Regulatory mechanism: CodY: transcription activation
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:


Labs working on this gene/RNA

Kouji Nakamura, Tsukuba, University, Japan

Your additional remarks

References

Heike Preis, Rita A Eckart, Rajani K Gudipati, Nadja Heidrich, Sabine Brantl
CodY activates transcription of a small RNA in Bacillus subtilis.
J Bacteriol: 2009, 191(17);5446-57
[PubMed:19542274] [WorldCat.org] [DOI] (I p)

Shinichi Saito, Hiroshi Kakeshita, Kouji Nakamura
Novel small RNA-encoding genes in the intergenic regions of Bacillus subtilis.
Gene: 2009, 428(1-2);2-8
[PubMed:18948176] [WorldCat.org] [DOI] (P p)