Difference between revisions of "BsrA"
(New page: * '''Description:''' small RNA <br/><br/> {| align="right" border="1" cellpadding="2" |- |style="background:#ABCDEF;" align="center"|'''Gene name''' |''bsrA'' |- |style="background:#ABCD...) |
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| Line 1: | Line 1: | ||
| − | * '''Description:''' | + | * '''Description:''' 6S RNA<br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
| Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || 6S RNA |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || antagonist of [[SigA]] |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Gene length''' || bp | + | |style="background:#ABCDEF;" align="center"| '''Gene length''' || 190 bp |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || | ||
| Line 36: | Line 36: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | |||
| + | reduced growth rate | ||
=== Database entries === | === Database entries === | ||
| Line 50: | Line 52: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''bsrA'' |
| − | * '''Sigma factor:''' | + | * '''Sigma factor:''' [[SigA]] |
| − | * '''Regulation:''' | + | * '''Regulation:''' expressed in vegetative cells |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| − | * '''Additional information:''' | + | * '''Additional information:''' trnascribed as 201 nt RNA, processed to mature 190 bp 6S RNA |
=Biological materials = | =Biological materials = | ||
| Line 77: | Line 79: | ||
=References= | =References= | ||
| − | # | + | # Suzuma S, Asari S, Bunai K, Yoshino K, Ando Y, Kakeshita H, Fujita M, Nakamura K, Yamane K (2002) Identification and characterization of novel small RNAs in the ''aspS-yrvM'' intergenic region of the ''Bacillus subtilis'' genome.. ''Microbiology'' '''148:''' 2591-2598. [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed] |
Revision as of 13:11, 20 February 2009
- Description: 6S RNA
| Gene name | bsrA |
| Synonyms | |
| Essential | no |
| Product | 6S RNA |
| Function | antagonist of SigA |
| Gene length | 190 bp |
| Immediate neighbours | |
| Gene sequence (+200bp) | |
| Genetic context File:GenE context.gif | |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
reduced growth rate
Database entries
- DBTBS entry: no entry
- SubtiList entry: no entry
- Structure:
Additional information
Expression and regulation
- Operon: bsrA
- Sigma factor: SigA
- Regulation: expressed in vegetative cells
- Regulatory mechanism:
- Additional information: trnascribed as 201 nt RNA, processed to mature 190 bp 6S RNA
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
Labs working on this gene/RNA
Kouji Nakamura, Tsukuba, University, Japan
Your additional remarks
References
- Suzuma S, Asari S, Bunai K, Yoshino K, Ando Y, Kakeshita H, Fujita M, Nakamura K, Yamane K (2002) Identification and characterization of novel small RNAs in the aspS-yrvM intergenic region of the Bacillus subtilis genome.. Microbiology 148: 2591-2598. PubMed
