Difference between revisions of "BsdC"

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|style="background:#ABCDEF;" align="center"|'''Function''' || resistance to salicylic acid
 
|style="background:#ABCDEF;" align="center"|'''Function''' || resistance to salicylic acid
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03640 bsdC]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03640 bsdC]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 52 kDa, 5.116   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 52 kDa, 5.116   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bsdB]]'', ''[[bsdD]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bsdB]]'', ''[[bsdD]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12158&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03640 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03640 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03640 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yclC_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yclC_context.gif]]

Revision as of 12:08, 13 May 2013

  • Description: phenolic acid decarboxylase

Gene name bsdC
Synonyms yclC
Essential no
Product phenolic acid decarboxylase
Function resistance to salicylic acid
Gene expression levels in SubtiExpress: bsdC
MW, pI 52 kDa, 5.116
Gene length, protein length 1419 bp, 473 aa
Immediate neighbours bsdB, bsdD
Sequences Protein DNA Advanced_DNA
Genetic context
YclC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
BsdC expression.png
























Categories containing this gene/protein

resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)

This gene is a member of the following regulons

BsdA regulon

The gene

Basic information

  • Locus tag: BSU03640

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ubiD family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation: induced by salicylic acid (BsdA) PubMed
  • Regulatory mechanism: BsdA: transcription activation PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Nguyen Van Duy, Ulrike Mäder, Ngoc Phuong Tran, Jean-François Cavin, Le Thi Tam, Dirk Albrecht, Michael Hecker, Haike Antelmann
The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid.
Proteomics: 2007, 7(5);698-710
[PubMed:17295427] [WorldCat.org] [DOI] (P p)

Boguslaw Lupa, Delina Lyon, Moreland D Gibbs, Rosalind A Reeves, Juergen Wiegel
Distribution of genes encoding the microbial non-oxidative reversible hydroxyarylic acid decarboxylases/phenol carboxylases.
Genomics: 2005, 86(3);342-51
[PubMed:15979273] [WorldCat.org] [DOI] (P p)