Difference between revisions of "BsdB"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bsdA]]'', ''[[bsdC]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[bsdA]]'', ''[[bsdC]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03630 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03630 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03630 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03630 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03630 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03630 DNA_with_flanks]
 
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|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yclB_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yclB_context.gif]]

Revision as of 09:28, 14 May 2013

  • Description: phenolic acid decarboxylase

Gene name bsdB
Synonyms yclB
Essential no
Product phenolic acid decarboxylase
Function resistance to salicylic acid
Gene expression levels in SubtiExpress: bsdB
MW, pI 22 kDa, 10.056
Gene length, protein length 612 bp, 204 aa
Immediate neighbours bsdA, bsdC
Sequences Protein DNA DNA_with_flanks
Genetic context
YclB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
BsdB expression.png
























Categories containing this gene/protein

resistance against other toxic compounds (nitric oxide, phenolic acids, flavonoids, oxalate)

This gene is a member of the following regulons

BsdA regulon

The gene

Basic information

  • Locus tag: BSU03630

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: polyprenyl P-hydroxybenzoate / phenylacrylic acid decarboxylases family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation: induced by salicylic acid (BsdA) PubMed
  • Regulatory mechanism: BsdA: transcription activation PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Nguyen Van Duy, Ulrike Mäder, Ngoc Phuong Tran, Jean-François Cavin, Le Thi Tam, Dirk Albrecht, Michael Hecker, Haike Antelmann
The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid.
Proteomics: 2007, 7(5);698-710
[PubMed:17295427] [WorldCat.org] [DOI] (P p)

Boguslaw Lupa, Delina Lyon, Moreland D Gibbs, Rosalind A Reeves, Juergen Wiegel
Distribution of genes encoding the microbial non-oxidative reversible hydroxyarylic acid decarboxylases/phenol carboxylases.
Genomics: 2005, 86(3);342-51
[PubMed:15979273] [WorldCat.org] [DOI] (P p)