Difference between revisions of "Biosynthesis/ acquisition of amino acids"

From SubtiWiki
Jump to: navigation, search
(Biosynthesis/ acquisition of proline)
(Biosynthesis/ acquisition of serine/ glycine/ alanine)
 
(10 intermediate revisions by 2 users not shown)
Line 41: Line 41:
 
* ''[[proJ]]''
 
* ''[[proJ]]''
 
* ''[[putP]]''
 
* ''[[putP]]''
 +
* ''[[gabP]]''
  
 
=== Biosynthesis/ acquisition of proline/ based on similarity ===  
 
=== Biosynthesis/ acquisition of proline/ based on similarity ===  
Line 71: Line 72:
  
 
=== Biosynthesis/ acquisition of lysine/ threonine ===  
 
=== Biosynthesis/ acquisition of lysine/ threonine ===  
* [[asd]]
+
* ''[[asd]]''
* [[dapA]]
+
* ''[[dapA]]''
* [[dapB]]
+
* ''[[dapB]]''
* [[dapF]]
+
* ''[[dapF]]''
* [[dapG]]
+
* ''[[dapG]]''
* [[hom]]
+
* ''[[dapI]]''
* [[lysA]]
+
* ''[[hom]]''
* [[lysC]]
+
* ''[[lysA]]''
* [[patA]]
+
* ''[[lysC]]''
* [[thrB]]
+
* ''[[patA]]''
* [[thrC]]
+
* ''[[thrB]]''
* [[yclM]]
+
* ''[[thrC]]''
* [[ykuR]]
+
* ''[[thrD]]''
 +
* ''[[thrR]]''
 +
* ''[[ykuQ]]''
 +
* ''[[yvsH]]''
  
 
=== Biosynthesis/ acquisition of lysine/ threonine/ based on similarity ===  
 
=== Biosynthesis/ acquisition of lysine/ threonine/ based on similarity ===  
Line 91: Line 95:
 
* [[glyA]]
 
* [[glyA]]
 
* [[serA]]
 
* [[serA]]
 +
* [[serB]]
 
* [[serC]]
 
* [[serC]]
 
* [[yrbD]]
 
* [[yrbD]]
  
 
=== Biosynthesis/ acquisition of cysteine ===  
 
=== Biosynthesis/ acquisition of cysteine ===  
* [[cysE]]
+
* [[CysE]]
* [[cysK]]
+
* [[CysK]]
* [[mccA]]
+
* [[MccA]]
* [[mccB]]
+
* [[MccB]]
* [[tcyA]]
+
* [[TcyJ]], [[TcyK]], [[TcyL]], [[TcyM]], [[TcyN]]: uptake of cystine
* [[tcyB]]
+
* [[TcyA]], [[TcyB]], [[TcyC]]: uptake of cystine
* [[tcyC]]
+
* [[TcyP]]: uptake of cystine
* [[tcyJ]]
+
* [[YxeM]]-[[YxeN]]-[[YxeO]]: uptake of cysteine (putative)
* [[tcyK]]
+
* [[YtlI]]
* [[tcyL]]
 
* [[tcyM]]
 
* [[tcyN]]
 
* [[tcyP]]
 
* [[ytlI]]
 
  
 
=== Biosynthesis/ acquisition of methionine/ s-adenosylmethionine ===  
 
=== Biosynthesis/ acquisition of methionine/ s-adenosylmethionine ===  
Line 127: Line 127:
 
* ''[[mtnK]]''
 
* ''[[mtnK]]''
 
* ''[[mtnN]]''
 
* ''[[mtnN]]''
 +
* ''[[mtnU]]''
 
* ''[[mtnW]]''
 
* ''[[mtnW]]''
 
* ''[[mtnX]]''
 
* ''[[mtnX]]''
Line 132: Line 133:
  
 
=== Biosynthesis/ acquisition of methionine/ s-adenosylmethionine/ based on similarity ===  
 
=== Biosynthesis/ acquisition of methionine/ s-adenosylmethionine/ based on similarity ===  
 +
* ''[[yitJ]]''
 
* ''[[yoaD]]''
 
* ''[[yoaD]]''
 
* ''[[yxjG]]''
 
* ''[[yxjG]]''
Line 168: Line 170:
 
* [[pabA]]
 
* [[pabA]]
 
* [[pheA]]
 
* [[pheA]]
* [[pheB]]
 
 
* [[rtpA]]
 
* [[rtpA]]
 
* [[trpA]]
 
* [[trpA]]
Line 191: Line 192:
 
* [[prs]]
 
* [[prs]]
 
* [[ybgF]]
 
* [[ybgF]]
 +
 +
== Important publications ==
 +
<pubmed>24163341 </pubmed>
 
=Back to [[categories]]=
 
=Back to [[categories]]=

Latest revision as of 18:27, 15 February 2017

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation

Biosynthesis/ acquisition of proline

Biosynthesis/ acquisition of proline/ based on similarity

Biosynthesis/ acquisition of arginine

Biosynthesis/ acquisition of aspartate/ asparagine

Biosynthesis/ acquisition of lysine/ threonine

Biosynthesis/ acquisition of lysine/ threonine/ based on similarity

Biosynthesis/ acquisition of serine/ glycine/ alanine

Biosynthesis/ acquisition of cysteine

Biosynthesis/ acquisition of methionine/ s-adenosylmethionine

Biosynthesis/ acquisition of methionine/ s-adenosylmethionine/ based on similarity

Biosynthesis/ acquisition of branched-chain amino acids

Biosynthesis/ acquisition of aromatic amino acids

Biosynthesis/ acquisition of histidine

Important publications

Allison Kriel, Shaun R Brinsmade, Jessica L Tse, Ashley K Tehranchi, Alycia N Bittner, Abraham L Sonenshein, Jue D Wang
GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes.
J Bacteriol: 2014, 196(1);189-201
[PubMed:24163341] [WorldCat.org] [DOI] (I p)

Back to categories