Difference between revisions of "Biosynthesis/ acquisition of amino acids"
(→Biosynthesis/ acquisition of serine/ glycine/ alanine) |
|||
| (14 intermediate revisions by 2 users not shown) | |||
| Line 10: | Line 10: | ||
|Related= | |Related= | ||
* [[T-box]] | * [[T-box]] | ||
| + | * [[CodY regulon]] | ||
|}} | |}} | ||
| Line 33: | Line 34: | ||
=== Biosynthesis/ acquisition of proline === | === Biosynthesis/ acquisition of proline === | ||
| − | * [[proA]] | + | * ''[[proA]]'' |
| − | * [[proB]] | + | * ''[[proB]]'' |
| − | * [[proG]] | + | * ''[[proG]]'' |
| − | * [[proH]] | + | * ''[[proH]]'' |
| − | * [[proI]] | + | * ''[[proI]]'' |
| − | * [[proJ]] | + | * ''[[proJ]]'' |
| − | * [[ | + | * ''[[putP]]'' |
| + | * ''[[gabP]]'' | ||
=== Biosynthesis/ acquisition of proline/ based on similarity === | === Biosynthesis/ acquisition of proline/ based on similarity === | ||
| Line 70: | Line 72: | ||
=== Biosynthesis/ acquisition of lysine/ threonine === | === Biosynthesis/ acquisition of lysine/ threonine === | ||
| − | * [[asd]] | + | * ''[[asd]]'' |
| − | * [[dapA]] | + | * ''[[dapA]]'' |
| − | * [[dapB]] | + | * ''[[dapB]]'' |
| − | * [[dapF]] | + | * ''[[dapF]]'' |
| − | * [[dapG]] | + | * ''[[dapG]]'' |
| − | * [[hom]] | + | * ''[[dapI]]'' |
| − | * [[lysA]] | + | * ''[[hom]]'' |
| − | * [[lysC]] | + | * ''[[lysA]]'' |
| − | * [[patA]] | + | * ''[[lysC]]'' |
| − | * [[thrB]] | + | * ''[[patA]]'' |
| − | * [[thrC]] | + | * ''[[thrB]]'' |
| − | * [[ | + | * ''[[thrC]]'' |
| − | * [[ | + | * ''[[thrD]]'' |
| + | * ''[[thrR]]'' | ||
| + | * ''[[ykuQ]]'' | ||
| + | * ''[[yvsH]]'' | ||
=== Biosynthesis/ acquisition of lysine/ threonine/ based on similarity === | === Biosynthesis/ acquisition of lysine/ threonine/ based on similarity === | ||
| Line 90: | Line 95: | ||
* [[glyA]] | * [[glyA]] | ||
* [[serA]] | * [[serA]] | ||
| + | * [[serB]] | ||
* [[serC]] | * [[serC]] | ||
* [[yrbD]] | * [[yrbD]] | ||
=== Biosynthesis/ acquisition of cysteine === | === Biosynthesis/ acquisition of cysteine === | ||
| − | * [[ | + | * [[CysE]] |
| − | * [[ | + | * [[CysK]] |
| − | * [[ | + | * [[MccA]] |
| − | * [[ | + | * [[MccB]] |
| − | * [[ | + | * [[TcyJ]], [[TcyK]], [[TcyL]], [[TcyM]], [[TcyN]]: uptake of cystine |
| − | + | * [[TcyA]], [[TcyB]], [[TcyC]]: uptake of cystine | |
| − | * [[ | + | * [[TcyP]]: uptake of cystine |
| − | + | * [[YxeM]]-[[YxeN]]-[[YxeO]]: uptake of cysteine (putative) | |
| − | + | * [[YtlI]] | |
| − | * [[ | ||
| − | * [[ | ||
| − | |||
| − | |||
| − | * [[ | ||
=== Biosynthesis/ acquisition of methionine/ s-adenosylmethionine === | === Biosynthesis/ acquisition of methionine/ s-adenosylmethionine === | ||
| − | * [[hom]] | + | *'' [[hom]]'' |
| − | * [[luxS]] | + | * ''[[luxS]]'' |
| − | * [[metA]] | + | * ''[[metA]]'' |
| − | * [[metC]] | + | * ''[[metC]]'' |
| − | * [[metE]] | + | * ''[[metE]]'' |
| − | * [[metI]] | + | * ''[[metI]]'' |
| − | * [[metK]] | + | * ''[[metK]]'' |
| − | * [[metN]] | + | * ''[[metN]]'' |
| − | * [[metP]] | + | * ''[[metP]]'' |
| − | * [[metQ]] | + | * ''[[metQ]]'' |
| − | * [[mtnA]] | + | *'' [[mtnA]]'' |
| − | * [[mtnB]] | + | *'' [[mtnB]]'' |
| − | * [[mtnD]] | + | * ''[[mtnD]]'' |
| − | * [[mtnE]] | + | * ''[[mtnE]]'' |
| − | * [[mtnK]] | + | * ''[[mtnK]]'' |
| − | * [[mtnN]] | + | * ''[[mtnN]]'' |
| − | * [[mtnW]] | + | * ''[[mtnU]]'' |
| − | * [[mtnX]] | + | * ''[[mtnW]]'' |
| − | * [[patB]] | + | * ''[[mtnX]]'' |
| + | * ''[[patB]]'' | ||
| + | |||
| + | === Biosynthesis/ acquisition of methionine/ s-adenosylmethionine/ based on similarity === | ||
| + | * ''[[yitJ]]'' | ||
| + | * ''[[yoaD]]'' | ||
| + | * ''[[yxjG]]'' | ||
| + | * ''[[yxjH]]'' | ||
=== Biosynthesis/ acquisition of branched-chain amino acids === | === Biosynthesis/ acquisition of branched-chain amino acids === | ||
| Line 162: | Line 170: | ||
* [[pabA]] | * [[pabA]] | ||
* [[pheA]] | * [[pheA]] | ||
| − | |||
* [[rtpA]] | * [[rtpA]] | ||
* [[trpA]] | * [[trpA]] | ||
| Line 185: | Line 192: | ||
* [[prs]] | * [[prs]] | ||
* [[ybgF]] | * [[ybgF]] | ||
| + | |||
| + | == Important publications == | ||
| + | <pubmed>24163341 </pubmed> | ||
=Back to [[categories]]= | =Back to [[categories]]= | ||
Latest revision as of 19:27, 15 February 2017
| Parent categories | |
| Neighbouring categories | |
| Related categories | |
Contents
- 1 Genes in this functional category
- 1.1 Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation
- 1.2 Biosynthesis/ acquisition of proline
- 1.3 Biosynthesis/ acquisition of proline/ based on similarity
- 1.4 Biosynthesis/ acquisition of arginine
- 1.5 Biosynthesis/ acquisition of aspartate/ asparagine
- 1.6 Biosynthesis/ acquisition of lysine/ threonine
- 1.7 Biosynthesis/ acquisition of lysine/ threonine/ based on similarity
- 1.8 Biosynthesis/ acquisition of serine/ glycine/ alanine
- 1.9 Biosynthesis/ acquisition of cysteine
- 1.10 Biosynthesis/ acquisition of methionine/ s-adenosylmethionine
- 1.11 Biosynthesis/ acquisition of methionine/ s-adenosylmethionine/ based on similarity
- 1.12 Biosynthesis/ acquisition of branched-chain amino acids
- 1.13 Biosynthesis/ acquisition of aromatic amino acids
- 1.14 Biosynthesis/ acquisition of histidine
- 2 Important publications
- 3 Back to categories
Genes in this functional category
Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation
Biosynthesis/ acquisition of proline
Biosynthesis/ acquisition of proline/ based on similarity
Biosynthesis/ acquisition of arginine
Biosynthesis/ acquisition of aspartate/ asparagine
Biosynthesis/ acquisition of lysine/ threonine
Biosynthesis/ acquisition of lysine/ threonine/ based on similarity
Biosynthesis/ acquisition of serine/ glycine/ alanine
Biosynthesis/ acquisition of cysteine
- CysE
- CysK
- MccA
- MccB
- TcyJ, TcyK, TcyL, TcyM, TcyN: uptake of cystine
- TcyA, TcyB, TcyC: uptake of cystine
- TcyP: uptake of cystine
- YxeM-YxeN-YxeO: uptake of cysteine (putative)
- YtlI
Biosynthesis/ acquisition of methionine/ s-adenosylmethionine
Biosynthesis/ acquisition of methionine/ s-adenosylmethionine/ based on similarity
Biosynthesis/ acquisition of branched-chain amino acids
Biosynthesis/ acquisition of aromatic amino acids
- aroA
- aroB
- aroC
- aroD
- aroE
- aroF
- aroH
- aroK
- hisC
- mtrB
- pabA
- pheA
- rtpA
- trpA
- trpB
- trpC
- trpD
- trpE
- trpF
- trpP
- tyrA
Biosynthesis/ acquisition of histidine
Important publications
Allison Kriel, Shaun R Brinsmade, Jessica L Tse, Ashley K Tehranchi, Alycia N Bittner, Abraham L Sonenshein, Jue D Wang
GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes.
J Bacteriol: 2014, 196(1);189-201
[PubMed:24163341]
[WorldCat.org]
[DOI]
(I p)
