Difference between revisions of "Biosynthesis/ acquisition of amino acids"

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(Biosynthesis/ acquisition of serine/ glycine/ alanine)
 
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{{CategoryTree
 
{{CategoryTree
 
|Parents=
 
|Parents=
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* 2.3.4. [[Putative amino acid transporter]]
 
* 2.3.4. [[Putative amino acid transporter]]
 
|Related=
 
|Related=
none
+
* [[T-box]]
 +
* [[CodY regulon]]
 
|}}
 
|}}
  
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=== Biosynthesis/ acquisition of proline ===  
 
=== Biosynthesis/ acquisition of proline ===  
* [[proA]]
+
* ''[[proA]]''
* [[proB]]
+
* ''[[proB]]''
* [[proG]]
+
* ''[[proG]]''
* [[proH]]
+
* ''[[proH]]''
* [[proI]]
+
* ''[[proI]]''
* [[proJ]]
+
* ''[[proJ]]''
* [[ycgO]]
+
* ''[[putP]]''
 +
* ''[[gabP]]''
  
 
=== Biosynthesis/ acquisition of proline/ based on similarity ===  
 
=== Biosynthesis/ acquisition of proline/ based on similarity ===  
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=== Biosynthesis/ acquisition of lysine/ threonine ===  
 
=== Biosynthesis/ acquisition of lysine/ threonine ===  
* [[asd]]
+
* ''[[asd]]''
* [[dapA]]
+
* ''[[dapA]]''
* [[dapB]]
+
* ''[[dapB]]''
* [[dapF]]
+
* ''[[dapF]]''
* [[dapG]]
+
* ''[[dapG]]''
* [[hom]]
+
* ''[[dapI]]''
* [[lysA]]
+
* ''[[hom]]''
* [[lysC]]
+
* ''[[lysA]]''
* [[patA]]
+
* ''[[lysC]]''
* [[thrB]]
+
* ''[[patA]]''
* [[thrC]]
+
* ''[[thrB]]''
* [[yclM]]
+
* ''[[thrC]]''
* [[ykuR]]
+
* ''[[thrD]]''
 +
* ''[[thrR]]''
 +
* ''[[ykuQ]]''
 +
* ''[[yvsH]]''
  
 
=== Biosynthesis/ acquisition of lysine/ threonine/ based on similarity ===  
 
=== Biosynthesis/ acquisition of lysine/ threonine/ based on similarity ===  
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* [[glyA]]
 
* [[glyA]]
 
* [[serA]]
 
* [[serA]]
 +
* [[serB]]
 
* [[serC]]
 
* [[serC]]
 
* [[yrbD]]
 
* [[yrbD]]
  
 
=== Biosynthesis/ acquisition of cysteine ===  
 
=== Biosynthesis/ acquisition of cysteine ===  
* [[cysE]]
+
* [[CysE]]
* [[cysK]]
+
* [[CysK]]
* [[mccA]]
+
* [[MccA]]
* [[mccB]]
+
* [[MccB]]
* [[tcyA]]
+
* [[TcyJ]], [[TcyK]], [[TcyL]], [[TcyM]], [[TcyN]]: uptake of cystine
* [[tcyB]]
+
* [[TcyA]], [[TcyB]], [[TcyC]]: uptake of cystine
* [[tcyC]]
+
* [[TcyP]]: uptake of cystine
* [[tcyJ]]
+
* [[YxeM]]-[[YxeN]]-[[YxeO]]: uptake of cysteine (putative)
* [[tcyK]]
+
* [[YtlI]]
* [[tcyL]]
 
* [[tcyM]]
 
* [[tcyN]]
 
* [[tcyP]]
 
* [[ytlI]]
 
  
 
=== Biosynthesis/ acquisition of methionine/ s-adenosylmethionine ===  
 
=== Biosynthesis/ acquisition of methionine/ s-adenosylmethionine ===  
* [[hom]]
+
*'' [[hom]]''
* [[luxS]]
+
* ''[[luxS]]''
* [[metA]]
+
* ''[[metA]]''
* [[metC]]
+
* ''[[metC]]''
* [[metE]]
+
* ''[[metE]]''
* [[metI]]
+
* ''[[metI]]''
* [[metK]]
+
* ''[[metK]]''
* [[metN]]
+
* ''[[metN]]''
* [[metP]]
+
* ''[[metP]]''
* [[metQ]]
+
* ''[[metQ]]''
* [[mtnA]]
+
*'' [[mtnA]]''
* [[mtnB]]
+
*'' [[mtnB]]''
* [[mtnD]]
+
* ''[[mtnD]]''
* [[mtnE]]
+
* ''[[mtnE]]''
* [[mtnK]]
+
* ''[[mtnK]]''
* [[mtnN]]
+
* ''[[mtnN]]''
* [[mtnW]]
+
* ''[[mtnU]]''
* [[mtnX]]
+
* ''[[mtnW]]''
* [[patB]]
+
* ''[[mtnX]]''
 +
* ''[[patB]]''
 +
 
 +
=== Biosynthesis/ acquisition of methionine/ s-adenosylmethionine/ based on similarity ===
 +
* ''[[yitJ]]''
 +
* ''[[yoaD]]''
 +
* ''[[yxjG]]''
 +
* ''[[yxjH]]''
  
 
=== Biosynthesis/ acquisition of branched-chain amino acids ===  
 
=== Biosynthesis/ acquisition of branched-chain amino acids ===  
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* [[azlC]]
 
* [[azlC]]
 
* [[azlD]]
 
* [[azlD]]
 +
* [[bcaP]]
 
* [[braB]]
 
* [[braB]]
 
* [[brnQ]]
 
* [[brnQ]]
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* [[pabA]]
 
* [[pabA]]
 
* [[pheA]]
 
* [[pheA]]
* [[pheB]]
 
 
* [[rtpA]]
 
* [[rtpA]]
 
* [[trpA]]
 
* [[trpA]]
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* [[prs]]
 
* [[prs]]
 
* [[ybgF]]
 
* [[ybgF]]
 +
 +
== Important publications ==
 +
<pubmed>24163341 </pubmed>
 +
=Back to [[categories]]=

Latest revision as of 18:27, 15 February 2017

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Biosynthesis/ acquisition of glutamate/ glutamine/ ammonium assimilation

Biosynthesis/ acquisition of proline

Biosynthesis/ acquisition of proline/ based on similarity

Biosynthesis/ acquisition of arginine

Biosynthesis/ acquisition of aspartate/ asparagine

Biosynthesis/ acquisition of lysine/ threonine

Biosynthesis/ acquisition of lysine/ threonine/ based on similarity

Biosynthesis/ acquisition of serine/ glycine/ alanine

Biosynthesis/ acquisition of cysteine

Biosynthesis/ acquisition of methionine/ s-adenosylmethionine

Biosynthesis/ acquisition of methionine/ s-adenosylmethionine/ based on similarity

Biosynthesis/ acquisition of branched-chain amino acids

Biosynthesis/ acquisition of aromatic amino acids

Biosynthesis/ acquisition of histidine

Important publications

Allison Kriel, Shaun R Brinsmade, Jessica L Tse, Ashley K Tehranchi, Alycia N Bittner, Abraham L Sonenshein, Jue D Wang
GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes.
J Bacteriol: 2014, 196(1);189-201
[PubMed:24163341] [WorldCat.org] [DOI] (I p)

Back to categories