bacF

bacF
168

aminotransferase involved in bacilysin synthesis

locus
BSU_37690
Molecular weight
44.54 kDa
pI
5.35
Protein length
Gene length
function
biosynthesis of the antibiotic bacilysin
product
pyridoxal 5-phosphate-dependent stereospecific aminotransferase
essential
no
ec
2.6.1.1
synonyms
bacF, ywfG, ipa-85d

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0436 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,868,287  3,869,486
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The protein
Catalyzed reaction/ biological activity
YwfG catalyzes transamination of tetrahydro-4-hydroxyphenylpyruvate (with L-Phe as amino donor), to form tetrahydrotyrosine [Pubmed|20052993]
Protein family
[wiki|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)
[wiki|Cofactors]
PLP
Structure
[PDB|6L1L] (apo-protein) [pubmed|32134000]
[PDB|6L1N] (substrate-bound) [pubmed|32134000]
[PDB|6L1O] (product-bound) [pubmed|32134000]
[PDB|2O1B] (from Staphylococcus aureus, 40% identity)
[AF|P39643]
Paralogous protein(s)
[protein|938E08D2C50649A52EC06B9A08C6A73598E68CE1|mtnE]
[wiki|Localization]
cytoplasm (according to Swiss-Prot)
Expression and Regulation
Operons
genes
[gene|3F49F4AEFC49C2883EFA60FEB3E77591F184195B|bacA]-[gene|0EEE23875DB720D256D53F00D1AD5EF24B538B27|bacB]-[gene|20A7DBA142F3BF8DCAD9732BD908CE8CC79AA993|bacC]-[gene|2CE0C0484A70EEE40277996CD3D564A84FEAF5B3|bacD]-[gene|4D2AD84E74888EC61E44DE5B8E31812F43250B05|bacE]-[gene|99434727013FCCD6E570AE550560A8546F7F2A41|bacF]
description
[Pubmed|12372825]
regulation
heterogeneous expression, percentage of expressing cells increases during colonization of plant roots [pubmed|34557426]
regulatory mechanism
[protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|codY]: repression, [Pubmed|12372825,21709425], in [regulon|protein:90ACE0DECA58D3C1A55E135120F7A0C1C920571C|codY regulon]
[protein|E5110D9C36E8C55AFD1419987B14A53232165F20|abrB]: repression, [Pubmed|12697329,21709425], in [regulon|protein:E5110D9C36E8C55AFD1419987B14A53232165F20|abrB regulon]
[protein|F7FD94CE7AB290FBFD3A9B88F204961668F9B42C|scoC]: repression, [Pubmed|19801406], in [regulon|protein:F7FD94CE7AB290FBFD3A9B88F204961668F9B42C|scoC regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|19801406], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
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[gene|3F49F4AEFC49C2883EFA60FEB3E77591F184195B|bacA]→[gene|99434727013FCCD6E570AE550560A8546F7F2A41|bacF]

2024-03-14 11:09:20

Jstuelk

72

7D644717829C1A41F65E52A4312081846FB55951

33F4BF1A14F6AC22A6ACC7091140A7F012E3837C

Biological materials
Mutant
MGNA-A514 (ywfG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/514 NBRP B. subtilis, Japan]
BKE37690 ([gene|99434727013FCCD6E570AE550560A8546F7F2A41|bacF]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE37690 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_GACATCGGACGGTGTTATTT,  downstream forward: _UP4_TCCCGCTAAAAAGCGGGATG
BKK37690 ([gene|99434727013FCCD6E570AE550560A8546F7F2A41|bacF]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK37690 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_GACATCGGACGGTGTTATTT,  downstream forward: _UP4_TCCCGCTAAAAAGCGGGATG
References
12372825,19801406,20052993,21948839,12697329,21709425,32134000,35562765

99434727013FCCD6E570AE550560A8546F7F2A41

Page visits: 3790

Time of last update: 2024-03-28 11:18:26

Author of last update: Jstuelk