Difference between revisions of "ArgD"

From SubtiWiki
Jump to: navigation, search
Line 23: Line 23:
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[argB]]'', ''[[carA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[argB]]'', ''[[carA]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11220 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11220 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11220 Advanced_DNA]
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU11220 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU11220 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU11220 DNA_with_flanks]
 
|-
 
|-
 
|-
 
|-

Revision as of 09:53, 14 May 2013

  • Description: acetylornithine transaminase

Gene name argD
Synonyms
Essential no
Product acetylornithine transaminase
Function biosynthesis of arginine
Gene expression levels in SubtiExpress: argD
Metabolic function and regulation of this protein in SubtiPathways:
Ammonium/ glutamate
MW, pI 40 kDa, 5.929
Gene length, protein length 1155 bp, 385 aa
Immediate neighbours argB, carA
Sequences Protein DNA DNA_with_flanks
Genetic context
ArgD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
ArgD expression.png




























Categories containing this gene/protein

biosynthesis/ acquisition of amino acids

This gene is a member of the following regulons

AhrC regulon

The gene

Basic information

  • Locus tag: BSU11220

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: N(2)-acetyl-L-ornithine + 2-oxoglutarate = N-acetyl-L-glutamate 5-semialdehyde + L-glutamate (according to Swiss-Prot)
  • Protein family: ArgD subfamily (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ulrike Mäder, Georg Homuth, Christian Scharf, Knut Büttner, Rüdiger Bode, Michael Hecker
Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability.
J Bacteriol: 2002, 184(15);4288-95
[PubMed:12107147] [WorldCat.org] [DOI] (P p)

A Mountain, N H Mann, R N Munton, S Baumberg
Cloning of a Bacillus subtilis restriction fragment complementing auxotrophic mutants of eight Escherichia coli genes of arginine biosynthesis.
Mol Gen Genet: 1984, 197(1);82-9
[PubMed:6096675] [WorldCat.org] [DOI] (P p)