Difference between revisions of "ArfM"

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|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of anaerobic genes
 
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of anaerobic genes
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU37290 arfM]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU37290 arfM]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism], [http://subtiwiki.uni-goettingen.de/pathways/stress_response.html Stress]'''
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism], [http://subtiwiki.uni-goettingen.de/pathways/stress_response.html Stress]'''
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[narG]]'', ''[[ywiC]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[narG]]'', ''[[ywiC]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15757&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU37290 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU37290 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU37290 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:arfM_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:arfM_context.gif]]

Revision as of 14:06, 13 May 2013

  • Description: regulation of anaerobic genes

Gene name arfM
Synonyms ywiD
Essential no
Product unknown
Function regulation of anaerobic genes
Gene expression levels in SubtiExpress: arfM
Metabolic function and regulation of this protein in SubtiPathways:
Central C-metabolism, Stress
MW, pI 17 kDa, 5.842
Gene length, protein length 474 bp, 158 aa
Immediate neighbours narG, ywiC
Sequences Protein DNA Advanced_DNA
Genetic context
ArfM context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
ArfM expression.png




























Categories containing this gene/protein

regulators of electron transport, transcription factors and their control

This gene is a member of the following regulons

Fnr regulon

The gene

Basic information

  • Locus tag: BSU37290

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • expressed under anaerobic conditions (Fnr) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Heike Reents, Richard Münch, Thorben Dammeyer, Dieter Jahn, Elisabeth Härtig
The Fnr regulon of Bacillus subtilis.
J Bacteriol: 2006, 188(3);1103-12
[PubMed:16428414] [WorldCat.org] [DOI] (P p)

M Marino, H C Ramos, T Hoffmann, P Glaser, D Jahn
Modulation of anaerobic energy metabolism of Bacillus subtilis by arfM (ywiD).
J Bacteriol: 2001, 183(23);6815-21
[PubMed:11698370] [WorldCat.org] [DOI] (P p)

H Cruz Ramos, L Boursier, I Moszer, F Kunst, A Danchin, P Glaser
Anaerobic transcription activation in Bacillus subtilis: identification of distinct FNR-dependent and -independent regulatory mechanisms.
EMBO J: 1995, 14(23);5984-94
[PubMed:8846791] [WorldCat.org] [DOI] (P p)