Difference between revisions of "AppA/2"

From SubtiWiki
Jump to: navigation, search
Line 9: Line 9:
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || write here
+
|style="background:#ABCDEF;" align="center"| '''Product''' || oligopeptide [[ABC transporter]]
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || write here
+
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU11382 appA/2]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU11382 appA/2]
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' ||
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || -, -
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' ||  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1164 bp, -
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[appA/1]]'', ''[[appB]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[appA/1]]'', ''[[appB]]''

Revision as of 10:34, 13 November 2012

  • Description: oligopeptide ABC transporter, inactive pseudogene in strain 168

Gene name appA/2
Synonyms
Essential no
Product oligopeptide ABC transporter
Function unknown
Gene expression levels in SubtiExpress: appA/2
MW, pI -, -
Gene length, protein length 1164 bp, -
Immediate neighbours appA/1, appB
Gene sequence (+200bp) Protein sequence
Genetic context
File:AppA/2 context.gif
Expression at a glance   PubMed
500px
























Categories containing this gene/protein

ABC transporters, pseudogenes

This gene is a member of the following regulons

CodY regulon, ScoC regulon

The gene

Basic information

  • Locus tag: BSU11382

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: no entry

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
    • repressed during exponential growth (ScoC) PubMed
    • repressed during growth in the presence of branched chain amino acids (CodY) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

search PubMed