Difference between revisions of "AbrB regulon"

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(Repression)
(Repression)
 
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=== Repression ===
 
=== Repression ===
 
* ''[[abrB]]''
 
* ''[[abrB]]''
* ''[[albA]]''
+
* ''[[ahpA]]-[[ahpT]]''  
* ''[[albB]]''
 
* ''[[albC]]''
 
* ''[[albD]]''
 
* ''[[albE]]''
 
* ''[[albF]]''
 
* ''[[albG]]''
 
 
* ''[[antE]]''
 
* ''[[antE]]''
 
* ''[[aprE]]''
 
* ''[[aprE]]''
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* ''[[bdhA]]''
 
* ''[[bdhA]]''
 
* ''[[besA]]''
 
* ''[[besA]]''
 +
* ''[[bmrB]]-[[bmrC]]-[[bmrD]]''
 +
* ''[[bslA]]''
 
* ''[[cccA]]''
 
* ''[[cccA]]''
 
* ''[[comK]]''
 
* ''[[comK]]''
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* ''[[phrK]]''
 
* ''[[phrK]]''
 
* ''[[phy]]''
 
* ''[[phy]]''
 +
* ''[[pksC]]-[[pksD]]-[[pksE]]-[[acpK]]-[[pksF]]-[[pksG]]-[[pksH]]-[[pksI]]-[[pksJ]]-[[pksL]]-[[pksM]]-[[pksN]]-[[pksR]]''
 
* ''[[pnbA]]''
 
* ''[[pnbA]]''
 
* ''[[ppsA]]''
 
* ''[[ppsA]]''
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* ''[[ppsE]]''
 
* ''[[ppsE]]''
 
* ''[[pspA]]''
 
* ''[[pspA]]''
* ''[[ptkA]]''
 
* ''[[ptpZ]]''
 
 
* ''[[qcrA]]''
 
* ''[[qcrA]]''
 
* ''[[qcrB]]''
 
* ''[[qcrB]]''
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* ''[[rok]]''
 
* ''[[rok]]''
 
* ''[[rsiW]]''
 
* ''[[rsiW]]''
* ''[[sboA]]''
+
* ''[[sboA]]-[[sboX]]-[[albA]]-[[albB]]-[[albC]]-[[albD]]-[[albE]]-[[albF]]-[[albG]]''
* ''[[sboX]]''
 
 
* ''[[sdpA]]-[[sdpB]]-[[sdpC]]''
 
* ''[[sdpA]]-[[sdpB]]-[[sdpC]]''
 
* ''[[sdpI]]''
 
* ''[[sdpI]]''
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* ''[[sinI]]''
 
* ''[[sinI]]''
 
* ''[[sinR]]''
 
* ''[[sinR]]''
 +
* ''[[sivA]]''
 +
* ''[[sivC]]''
 
* ''[[skfA]]''
 
* ''[[skfA]]''
 
* ''[[skfB]]''
 
* ''[[skfB]]''
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* ''[[spoVG]]''
 
* ''[[spoVG]]''
 
* ''[[sunA]]''
 
* ''[[sunA]]''
* ''[[sunT]]-[[bdbA]]-[[yolJ]]''
+
* ''[[sunT]]-[[bdbA]]-[[sunS]]''
 
* ''[[tapA]]-[[sipW]]-[[tasA]]''
 
* ''[[tapA]]-[[sipW]]-[[tasA]]''
* ''[[tkmA]]''
+
* ''[[tkmA]]-[[ptkA]]-[[ptpZ]]-[[ugd]]''
 
* ''[[tlpA]]''
 
* ''[[tlpA]]''
 
* ''[[xynC]]''
 
* ''[[xynC]]''
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* ''[[yflB]]''
 
* ''[[yflB]]''
 
* ''[[yfmG]]''
 
* ''[[yfmG]]''
* ''[[yfmH]]''
 
 
* ''[[yfmI]]''
 
* ''[[yfmI]]''
 
* ''[[yhaP]]''
 
* ''[[yhaP]]''
 
* ''[[yhaQ]]''
 
* ''[[yhaQ]]''
* ''[[yheJ]]''
 
 
* ''[[yjcM]]''
 
* ''[[yjcM]]''
 
* ''[[yjdB]]''
 
* ''[[yjdB]]''
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* ''[[yknY]]''
 
* ''[[yknY]]''
 
* ''[[yknZ]]''
 
* ''[[yknZ]]''
* ''[[ykuU]]''
 
* ''[[ykuV]]''
 
 
* ''[[ylaE]]''
 
* ''[[ylaE]]''
 
* ''[[ylbA]]''
 
* ''[[ylbA]]''
* ''[[ylqB]]''
+
 
 
* ''[[ymaE]]''
 
* ''[[ymaE]]''
 
* ''[[ymzB]]''
 
* ''[[ymzB]]''
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* ''[[yrzI]]''
 
* ''[[yrzI]]''
 
* ''[[yscB]]''
 
* ''[[yscB]]''
* ''[[yuaB]]''
 
 
* ''[[yurI]]''
 
* ''[[yurI]]''
 
* ''[[yvcA]]''
 
* ''[[yvcA]]''
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* ''[[ywbF]]''
 
* ''[[ywbF]]''
 
* ''[[ywcE]]''
 
* ''[[ywcE]]''
* ''[[yweA]]''
+
 
 
* ''[[ywoF]]''
 
* ''[[ywoF]]''
 
* ''[[yxaA]]''
 
* ''[[yxaA]]''
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* ''[[yydF]]-[[yydG]]-[[yydH]]-[[yydI]]-[[yydJ]]''
 
* ''[[yydF]]-[[yydG]]-[[yydH]]-[[yydI]]-[[yydJ]]''
  
= Important publications on the [[AbrB]] [[regulon]]: {{PubMed|20817675,18840696}} =
+
= Important publications on the [[AbrB]] [[regulon]]: =
 +
<pubmed>20817675,18840696 23580539</pubmed>
  
 
=Back to [[regulons]]=
 
=Back to [[regulons]]=

Latest revision as of 16:55, 26 February 2016

Regulator

AbrB

Genes in this regulon

Activation

Repression

Important publications on the AbrB regulon:

Onuma Chumsakul, Kensuke Nakamura, Tetsuya Kurata, Tomoaki Sakamoto, Jon L Hobman, Naotake Ogasawara, Taku Oshima, Shu Ishikawa
High-resolution mapping of in vivo genomic transcription factor binding sites using in situ DNase I footprinting and ChIP-seq.
DNA Res: 2013, 20(4);325-38
[PubMed:23580539] [WorldCat.org] [DOI] (I p)

Onuma Chumsakul, Hiroki Takahashi, Taku Oshima, Takahiro Hishimoto, Shigehiko Kanaya, Naotake Ogasawara, Shu Ishikawa
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation.
Nucleic Acids Res: 2011, 39(2);414-28
[PubMed:20817675] [WorldCat.org] [DOI] (I p)

Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696] [WorldCat.org] [DOI] (I p)


Back to regulons