Difference between revisions of "Aag"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxzF]]'', ''[[katX]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxzF]]'', ''[[katX]]''
 
|-
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38620 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38620 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38620 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU38620 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU38620 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU38620 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yxlJ_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yxlJ_context.gif]]

Revision as of 11:37, 14 May 2013

  • Description: general stress protein, similar to DNA-3-methyladenine glycosidase II

Gene name aag
Synonyms yxlJ
Essential no
Product unknown
Function survival of salt and ethanol stresses
Gene expression levels in SubtiExpress: aag
MW, pI 21 kDa, 6.117
Gene length, protein length 588 bp, 196 aa
Immediate neighbours yxzF, katX
Sequences Protein DNA DNA_with_flanks
Genetic context
YxlJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
Aag expression.png


























Categories containing this gene/protein

DNA repair/ recombination, general stress proteins (controlled by SigB)

This gene is a member of the following regulons

SigB regulon

The gene

Basic information

  • Locus tag: BSU38620

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: removes hypoxanthine, 3-alkylated purines, and 1,N6-ethenoadenine from DNA; hypoxanthine and 1,N6-ethenoadenine are the preferred substrates PubMed
  • Protein family: DNA glycosylase MPG family (according to Swiss-Prot) AAG family of 3-methyladenine DNA glycosylases
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References