YdbM

From SubtiWiki
Revision as of 09:31, 14 May 2013 by 134.76.70.252 (talk)
Jump to: navigation, search
  • Description: acyl-CoA dehydrogenase

Gene name ydbM
Synonyms
Essential no
Product acyl-CoA dehydrogenase
Function sulphur metabolism
Gene expression levels in SubtiExpress: ydbM
MW, pI 41 kDa, 5.721
Gene length, protein length 1143 bp, 381 aa
Immediate neighbours ydbL, fbpB
Sequences Protein DNA DNA_with_flanks
Genetic context
YdbM context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdbM expression.png
























Categories containing this gene/protein

poorly characterized/ putative enzymes

This gene is a member of the following regulons

CymR regulon

The gene

Basic information

  • Locus tag: BSU04520

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: acyl-CoA dehydrogenase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: ydbM (according to DBTBS)
  • Sigma factor:
  • Regulation:
    • repressed in the presence of cysteine (CymR) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Sergine Even, Pierre Burguière, Sandrine Auger, Olga Soutourina, Antoine Danchin, Isabelle Martin-Verstraete
Global control of cysteine metabolism by CymR in Bacillus subtilis.
J Bacteriol: 2006, 188(6);2184-97
[PubMed:16513748] [WorldCat.org] [DOI] (P p)