YdaB

From SubtiWiki
Revision as of 09:30, 14 May 2013 by 134.76.70.252 (talk)
Jump to: navigation, search
  • Description: similar to acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)

Gene name ydaB
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ydaB
MW, pI 51 kDa, 4.849
Gene length, protein length 1395 bp, 465 aa
Immediate neighbours mtlR, ydaC
Sequences Protein DNA DNA_with_flanks
Genetic context
YdaB context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YdaB expression.png
























Categories containing this gene/protein

proteins of unknown function

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU04170

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ATP-dependent AMP-binding enzyme family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • the mRNA is substantially stabilized upon depletion of RNase Y (the half-life of the mRNA increases from 2 to 80 min) PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 81(6): 1459-1473. 
PubMed:21815947