Difference between revisions of "YfmT"

From SubtiWiki
Jump to: navigation, search
Line 55: Line 55:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07350&redirect=T BSU07350]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yfmTS.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yfmTS.html]
Line 92: Line 93:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU07350&redirect=T BSU07350]
  
 
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3RHH 3RHH] (from from ''Bacillus halodurans'' C-125 complexed with NADP, 32% identity, 67% similarity)
 
* '''Structure:''' [http://www.pdb.org/pdb/explore/explore.do?structureId=3RHH 3RHH] (from from ''Bacillus halodurans'' C-125 complexed with NADP, 32% identity, 67% similarity)

Revision as of 13:10, 2 April 2014

  • Description: similar to benzaldehyde dehydrogenase

Gene name yfmT
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yfmT
MW, pI 53 kDa, 5.077
Gene length, protein length 1455 bp, 485 aa
Immediate neighbours yfnA, yfmS
Sequences Protein DNA DNA_with_flanks
Genetic context
YfmT context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YfmT expression.png
























Categories containing this gene/protein

poorly characterized/ putative enzymes

This gene is a member of the following regulons

SigD regulon

The gene

Basic information

  • Locus tag: BSU07350

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 3RHH (from from Bacillus halodurans C-125 complexed with NADP, 32% identity, 67% similarity)
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Masakuni Serizawa, Hiroki Yamamoto, Hirotake Yamaguchi, Yasutaro Fujita, Kazuo Kobayashi, Naotake Ogasawara, Junichi Sekiguchi
Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses.
Gene: 2004, 329;125-36
[PubMed:15033535] [WorldCat.org] [DOI] (P p)

Hiroki Yamamoto, Shigeki Uchiyama, Fajar Aji Nugroho, Junichi Sekiguchi
A 23.4 kb segment at the 69 degrees-70 degrees region of the Bacillus subtilis genome.
Microbiology (Reading): 1997, 143 ( Pt 4);1317-1320
[PubMed:9141694] [WorldCat.org] [DOI] (P p)