Difference between revisions of "YomL"

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(Biological materials)
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* '''Description:''' unknown essential protein<br/><br/>
+
* '''Description:''' unknown protein<br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes {{PubMed|17114254}}
+
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown  
 
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown  
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= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
 
{{SubtiWiki category|[[proteins of unknown function]]}},
 
{{SubtiWiki category|[[proteins of unknown function]]}},
{{SubtiWiki category|[[essential genes]]}},
 
 
{{SubtiWiki category|[[SPß prophage]]}}
 
{{SubtiWiki category|[[SPß prophage]]}}
  
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===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
essential {{PubMed|17114254}}
 
  
 
=== Database entries ===
 
=== Database entries ===
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* '''Mutant:'''
 
* '''Mutant:'''
**BP118 (<i>yomL::kan</i>), available in [[Fabian Commichau]]'s lab
+
**BP118 (<i>yomL::kan</i>), available in [[Fabian Commichau]]'s lab {{PubMed|24178028}}
  
 
* '''Expression vector:'''
 
* '''Expression vector:'''
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=References=
 
=References=
<pubmed>17114254  23420519 </pubmed>
+
<pubmed>17114254  23420519 24178028 </pubmed>
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 11:52, 2 November 2013

  • Description: unknown protein

Gene name yomL
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yomL
MW, pI 25 kDa, 9.357
Gene length, protein length 684 bp, 228 aa
Immediate neighbours yozP, youB
Sequences Protein DNA DNA_with_flanks
Genetic context
YomL context.gif
This image was kindly provided by SubtiList















Categories containing this gene/protein

proteins of unknown function, SPß prophage

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU21320

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s): YddT (the two proteins differ in only 4 out of 228 amino acids)

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Expression vector:
    • IPTG inducible expression of Strep-yomL in E. coli: pGP2580 (in pGP172), available in Jörg Stülke's lab
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Raphael H Michna, Fabian M Commichau, Dominik Tödter, Christopher P Zschiedrich, Jörg Stülke
SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information.
Nucleic Acids Res: 2014, 42(Database issue);D692-8
[PubMed:24178028] [WorldCat.org] [DOI] (I p)

Fabian M Commichau, Nico Pietack, Jörg Stülke
Essential genes in Bacillus subtilis: a re-evaluation after ten years.
Mol Biosyst: 2013, 9(6);1068-75
[PubMed:23420519] [WorldCat.org] [DOI] (I p)

Helena B Thomaides, Ella J Davison, Lisa Burston, Hazel Johnson, David R Brown, Alison C Hunt, Jeffery Errington, Lloyd Czaplewski
Essential bacterial functions encoded by gene pairs.
J Bacteriol: 2007, 189(2);591-602
[PubMed:17114254] [WorldCat.org] [DOI] (P p)