Difference between revisions of "YfjP"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfjQ]]'', ''[[yfjO]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yfjQ]]'', ''[[yfjO]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08010 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08010 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08010 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU08010 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU08010 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU08010 DNA_with_flanks]
 
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|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yfjP_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yfjP_context.gif]]

Revision as of 09:43, 14 May 2013

  • Description: similar to DNA-3-methyladenine glycosidase II

Gene name yfjP
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yfjP
MW, pI 33 kDa, 5.524
Gene length, protein length 861 bp, 287 aa
Immediate neighbours yfjQ, yfjO
Sequences Protein DNA DNA_with_flanks
Genetic context
YfjP context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YfjP expression.png
























Categories containing this gene/protein

DNA repair/ recombination

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU08010

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Hydrolysis of alkylated DNA, releasing 3-methyladenine, 3-methylguanine, 7-methylguanine and 7-methyladenine (according to Swiss-Prot)
  • Protein family: alkylbase DNA glycosidase alkA family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References