Difference between revisions of "YukD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU31900 yukD]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31900 yukD]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 6.311   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 6.311   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yukC]]'', ''[[yukE]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yukC]]'', ''[[yukE]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15178&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU31900 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU31900 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU31900 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yukD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yukD_context.gif]]

Revision as of 13:45, 13 May 2013

  • Description: putative bacteriocin

Gene name yukD
Synonyms
Essential no
Product putative bacteriocin
Function unknown
Gene expression levels in SubtiExpress: yukD
MW, pI 8 kDa, 6.311
Gene length, protein length 237 bp, 79 aa
Immediate neighbours yukC, yukE
Sequences Protein DNA Advanced_DNA
Genetic context
YukD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YukD expression.png
























Categories containing this gene/protein

biosynthesis of antibacterial compounds

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU31900

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Anne de Jong, Sacha A F T van Hijum, Jetta J E Bijlsma, Jan Kok, Oscar P Kuipers
BAGEL: a web-based bacteriocin genome mining tool.
Nucleic Acids Res: 2006, 34(Web Server issue);W273-9
[PubMed:16845009] [WorldCat.org] [DOI] (I p)

Carlos São-José, Catarina Baptista, Mário A Santos
Bacillus subtilis operon encoding a membrane receptor for bacteriophage SPP1.
J Bacteriol: 2004, 186(24);8337-46
[PubMed:15576783] [WorldCat.org] [DOI] (P p)