Difference between revisions of "YpfD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU22880 ypfD]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU22880 ypfD]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 4.569   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 4.569   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[fni]]'', ''[[cmk]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[fni]]'', ''[[cmk]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14204&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU22880 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU22880 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU22880 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ypfD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ypfD_context.gif]]

Revision as of 13:10, 13 May 2013

Gene name ypfD
Synonyms jofD
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ypfD
MW, pI 42 kDa, 4.569
Gene length, protein length 1146 bp, 382 aa
Immediate neighbours fni, cmk
Sequences Protein DNA Advanced_DNA
Genetic context
YpfD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YpfD expression.png















Categories containing this gene/protein

translation, phosphoproteins

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU22880

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: ribosomal protein S1P family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification: phosphorylation on Ser-243 PubMed
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • The mRNA has a long 5' leader region. This may indicate RNA-based regulation PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Irnov Irnov, Cynthia M Sharma, Jörg Vogel, Wade C Winkler
Identification of regulatory RNAs in Bacillus subtilis.
Nucleic Acids Res: 2010, 38(19);6637-51
[PubMed:20525796] [WorldCat.org] [DOI] (I p)

Boris Macek, Ivan Mijakovic, Jesper V Olsen, Florian Gnad, Chanchal Kumar, Peter R Jensen, Matthias Mann
The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis.
Mol Cell Proteomics: 2007, 6(4);697-707
[PubMed:17218307] [WorldCat.org] [DOI] (P p)