Difference between revisions of "XynD"

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|style="background:#ABCDEF;" align="center"|'''Function''' || arabinoxylan degradation
 
|style="background:#ABCDEF;" align="center"|'''Function''' || arabinoxylan degradation
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU18160 xynD]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18160 xynD]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 54 kDa, 8.031   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 54 kDa, 8.031   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[xynC]]'', ''[[yngA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[xynC]]'', ''[[yngA]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13699&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18160 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18160 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18160 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:xynD_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:xynD_context.gif]]

Revision as of 12:57, 13 May 2013

  • Description: arabinoxylan arabinofuranohydrolase

Gene name xynD
Synonyms
Essential no
Product arabinoxylan arabinofuranohydrolase
Function arabinoxylan degradation
Gene expression levels in SubtiExpress: xynD
MW, pI 54 kDa, 8.031
Gene length, protein length 1539 bp, 513 aa
Immediate neighbours xynC, yngA
Sequences Protein DNA Advanced_DNA
Genetic context
XynD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
XynD expression.png
























Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

AbrB regulon

The gene

Basic information

  • Locus tag: BSU18160

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides (according to Swiss-Prot)
  • Protein family: glycosyl hydrolase 43 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]

Additional information

Expression and regulation

  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Birgit Voigt, Haike Antelmann, Dirk Albrecht, Armin Ehrenreich, Karl-Heinz Maurer, Stefan Evers, Gerhard Gottschalk, Jan Maarten van Dijl, Thomas Schweder, Michael Hecker
Cell physiology and protein secretion of Bacillus licheniformis compared to Bacillus subtilis.
J Mol Microbiol Biotechnol: 2009, 16(1-2);53-68
[PubMed:18957862] [WorldCat.org] [DOI] (I p)