Difference between revisions of "RhiN"

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|style="background:#ABCDEF;" align="center"|'''Function''' || intracellular degradation of disaccharides generated by [[YesX]]
 
|style="background:#ABCDEF;" align="center"|'''Function''' || intracellular degradation of disaccharides generated by [[YesX]]
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU07000 yesR]
+
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU07000 yesR]
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 38 kDa, 4.757   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 38 kDa, 4.757   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yesQ]]'', ''[[yesS]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yesQ]]'', ''[[yesS]]''
 
|-
 
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12519&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
+
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU07000 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU07000 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU07000 Advanced_DNA]
 
|-
 
|-
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yesR_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yesR_context.gif]]

Revision as of 12:19, 13 May 2013

  • Description: galacturonyl hydrolase, catalyses intracellular degradation of disaccharides generated by YesX

Gene name yesR
Synonyms
Essential no
Product galacturonyl hydrolase, catalyses intracellular
degradation of disaccharides generated by YesX
Function intracellular degradation of disaccharides generated by YesX
Gene expression levels in SubtiExpress: yesR
MW, pI 38 kDa, 4.757
Gene length, protein length 1032 bp, 344 aa
Immediate neighbours yesQ, yesS
Sequences Protein DNA Advanced_DNA
Genetic context
YesR context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YesR expression.png
























Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU07000

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: glycosyl hydrolase 105 family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Akihito Ochiai, Takafumi Itoh, Akiko Kawamata, Wataru Hashimoto, Kousaku Murata
Plant cell wall degradation by saprophytic Bacillus subtilis strains: gene clusters responsible for rhamnogalacturonan depolymerization.
Appl Environ Microbiol: 2007, 73(12);3803-13
[PubMed:17449691] [WorldCat.org] [DOI] (P p)

Takafumi Itoh, Akihito Ochiai, Bunzo Mikami, Wataru Hashimoto, Kousaku Murata
A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide.
J Mol Biol: 2006, 360(3);573-85
[PubMed:16781735] [WorldCat.org] [DOI] (P p)