Difference between revisions of "HypO"

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|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yfkO''
+
|''yfkO'' (hypO)
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''hypO''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
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|style="background:#ABCDEF;" align="center"| '''Product''' || NAD(P)H-flavin nitroreductase  
 
|style="background:#ABCDEF;" align="center"| '''Product''' || NAD(P)H-flavin nitroreductase  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+
|style="background:#ABCDEF;" align="center"|'''Function''' || probably involved in NaOCl and diamide detoxification
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 25 kDa, 5.667   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 25 kDa, 5.667   
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= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
  
 +
'''The ''[[yybR]]'' (hypR) regulon
  
 
=The gene=
 
=The gene=
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=Expression and regulation=
 
=Expression and regulation=
  
* '''Operon:''' ''ykfO'' (according to [http://dbtbs.hgc.jp/COG/prom/yfkO.html DBTBS])
+
* '''Operon:''' ''ykfO'' (hypO) (according to [http://dbtbs.hgc.jp/COG/prom/yfkO.html DBTBS])
  
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
  
* '''Regulation:'''  
+
* '''Regulation:''' induced under disulfide stress conditions (diamide, NaOCl)
  
* '''Regulatory mechanism:'''  
+
* '''Regulatory mechanism:''' induction of YfkO (HypO) positively controlled by the MarR/DUF24-family regulator YybR (HypR)
  
 
* '''Additional information:'''
 
* '''Additional information:'''
Line 126: Line 127:
 
=References=
 
=References=
 
<pubmed> 20727918 </pubmed>
 
<pubmed> 20727918 </pubmed>
 +
 +
Palm, Gottfried; Chi, Bui; Waack, Paul; Gronau, Katrin; Becher, Dörte; Albrecht, Dirk; Hinrichs, Winfried; Read, Randy; Antelmann, Haike
 +
Structural insights into the redox-switch mechanism of the MarR/DUF24-type regulator HypR
 +
Nucleic Acid Research 2012, in press
 +
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 10:55, 26 December 2011

  • Description: NAD(P)H-flavin nitroreductase

Gene name yfkO (hypO)
Synonyms hypO
Essential no
Product NAD(P)H-flavin nitroreductase
Function probably involved in NaOCl and diamide detoxification
MW, pI 25 kDa, 5.667
Gene length, protein length 663 bp, 221 aa
Immediate neighbours treR, yfkN
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YfkO context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

electron transport/ other

This gene is a member of the following regulons

The yybR (hypR) regulon

The gene

Basic information

  • Locus tag: BSU07830

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: nitroreductase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon: ykfO (hypO) (according to DBTBS)
  • Regulation: induced under disulfide stress conditions (diamide, NaOCl)
  • Regulatory mechanism: induction of YfkO (HypO) positively controlled by the MarR/DUF24-family regulator YybR (HypR)
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

G A Prosser, A V Patterson, D F Ackerley
uvrB gene deletion enhances SOS chromotest sensitivity for nitroreductases that preferentially generate the 4-hydroxylamine metabolite of the anti-cancer prodrug CB1954.
J Biotechnol: 2010, 150(1);190-4
[PubMed:20727918] [WorldCat.org] [DOI] (I p)


Palm, Gottfried; Chi, Bui; Waack, Paul; Gronau, Katrin; Becher, Dörte; Albrecht, Dirk; Hinrichs, Winfried; Read, Randy; Antelmann, Haike Structural insights into the redox-switch mechanism of the MarR/DUF24-type regulator HypR Nucleic Acid Research 2012, in press