Difference between revisions of "RapG"

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(Expression and regulation)
(Expression and regulation)
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=Expression and regulation=
 
=Expression and regulation=
 +
* '''Operon:''' ''[[rapG]]-[[phrG]]'' {{PubMed|12950930}}
  
* '''Operon:'''
+
* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|16553878}}, SigH {{PubMed|12950930}}
 
 
* '''[[Sigma factor]]:'''  
 
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 
** repressed by [[SinR]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed]
 
** repressed by [[SinR]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed]
** repressed by [[RghR]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
+
** repressed by [[RghR]] {{PubMed|16553878}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 
** [[SinR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed]
 
** [[SinR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16430695 PubMed]
** [[RghR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
+
** [[RghR]]: transcription repression {{PubMed|16553878}}
  
 
* '''Additional information:'''
 
* '''Additional information:'''

Revision as of 20:24, 11 February 2010

Gene name rapG
Synonyms yycM
Essential no
Product response regulator aspartate phosphatase
Function control of DegU activity
MW, pI 42 kDa, 4.807
Gene length, protein length 1095 bp, 365 aa
Immediate neighbours yycN, phrG
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
RapG context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU40300

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: control of DegU activity PubMed
  • Protein family: RAP family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: binding of PhrG to RapG prevents it from binding DegU PubMed
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References