Difference between revisions of "HemD"

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Line 80: Line 80:
 
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P21248 P21248]
 
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P21248 P21248]
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU28140]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU28140]
  
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/4.2.1.75 4.2.1.75]
 
* '''E.C. number:''' [http://www.expasy.org/enzyme/4.2.1.75 4.2.1.75]

Revision as of 02:38, 25 June 2009

  • Description: uroporphyrinogen-III synthase

Gene name hemD
Synonyms
Essential no
Product uroporphyrinogen-III synthase
Function heme biosynthesis
MW, pI 28 kDa, 5.087
Gene length, protein length 786 bp, 262 aa
Immediate neighbours hemB, hemC
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
HemD context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU28140

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Hydroxymethylbilane = uroporphyrinogen III + H2O (according to Swiss-Prot)
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]

Additional information

Expression and regulation

  • Operon:
  • Regulation:
    • repressed in the absence of hydrogen peroxide (PerR) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

A F Herbig, J D Helmann
Roles of metal ions and hydrogen peroxide in modulating the interaction of the Bacillus subtilis PerR peroxide regulon repressor with operator DNA.
Mol Microbiol: 2001, 41(4);849-59
[PubMed:11532148] [WorldCat.org] [DOI] (P p)

Per Johansson, Lars Hederstedt
Organization of genes for tetrapyrrole biosynthesis in gram--positive bacteria.
Microbiology (Reading): 1999, 145 ( Pt 3);529-538
[PubMed:10217486] [WorldCat.org] [DOI] (P p)

M Hansson, L Rutberg, I Schröder, L Hederstedt
The Bacillus subtilis hemAXCDBL gene cluster, which encodes enzymes of the biosynthetic pathway from glutamate to uroporphyrinogen III.
J Bacteriol: 1991, 173(8);2590-9
[PubMed:1672867] [WorldCat.org] [DOI] (P p)