Difference between revisions of "RocR"
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* '''Protein family:''' [[sigma-54 ⎮SigL]] interacting transcription activator | * '''Protein family:''' [[sigma-54 ⎮SigL]] interacting transcription activator | ||
+ | |||
+ | [[Sigma-54 |SigL]] | ||
* '''Paralogous protein(s):''' | * '''Paralogous protein(s):''' |
Revision as of 11:46, 19 December 2008
- Description: transcriptional activator of arginine utilization operons
Gene name | rocR |
Synonyms | |
Essential | no |
Product | transcriptional regulator |
Function | transcriptional activator of arginine utilization operons |
MW, pI | 52.6 kDa, 6.08 |
Gene length, protein length | 1383 bp, 461 amino acids |
Immediate neighbours | rocD, yyxA |
Gene sequence (+200bp) | Protein sequence |
Genetic context File:GenE context.gif |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: transcription activation at SigL-dependent promoters of rocABC, rocDEF, and rocG
- Protein family: sigma-54 ⎮SigL interacting transcription activator
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Sigma-54 factor interaction domain (143 – 372)
- nucleotid-binding domain (171 – 178)
- nucleotid-binding Domain (233 – 242)
- HTH motif (434 – 453)
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions: RocR-SigL
- Localization:
Database entries
- Structure:
- Swiss prot entry: [3]
- KEGG entry: [4]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Sigma factor:
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
Labs working on this gene/protein
Your additional remarks
References
- Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed