Difference between revisions of "SigW"

From SubtiWiki
Jump to: navigation, search
Line 13: Line 13:
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || resistance against SdpC
 
|style="background:#ABCDEF;" align="center"|'''Function''' || resistance against SdpC
that functions in detoxification, production of antimicrobial compounds  
+
that functions in detoxification and/or production of antimicrobial compounds  
 
 
or both (''[[pbpE]]-[[racX]], [[yteI]], [[yuaG]], [[yknX| yknXYZ]], [[ydjP]], [[yfhM]]'')
 
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 8.614   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 8.614   
Line 64: Line 62:
 
=== Genes controlled by SigW ===
 
=== Genes controlled by SigW ===
  
''[[abh]]'', ''[[pbpE]]'', ''[[xpaC]]-[[yaaN]]''
+
''[[abh]]'', ''[[pbpE]]-[[racX]]'',''[[xpaC]]-[[yaaN]]'', ''[[yteI]], [[yuaG]], [[yknX| yknXYZ]], [[ydjP]], [[yfhM]]''
  
 
=== Extended information on the protein ===
 
=== Extended information on the protein ===

Revision as of 17:44, 7 April 2009

  • Description: RNA polymerase ECF-type sigma factor SigW

Gene name sigW
Synonyms ybbL
Essential no
Product RNA polymerase ECF-type sigma factor SigW
Function resistance against SdpC

that functions in detoxification and/or production of antimicrobial compounds

MW, pI 21 kDa, 8.614
Gene length, protein length 561 bp, 187 aa
Immediate neighbours trnSL-Gln2, ybbM
Gene sequence (+200bp) Protein sequence
Genetic context
SigW context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Genes controlled by SigW

abh, pbpE-racX,xpaC-yaaN, yteI, yuaG, yknXYZ, ydjP, yfhM

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

John Helmann, Cornell University, USA Homepage

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed