Difference between revisions of "TagD"

From SubtiWiki
Jump to: navigation, search
Line 61: Line 61:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU35740&redirect=T BSU35740]
  
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/tagDEF.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/tagDEF.html]
Line 100: Line 101:
  
 
=== Database entries ===
 
=== Database entries ===
 +
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU35740&redirect=T BSU35740]
  
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1N1D 1N1D] (complex with CDP-glycerol) {{PubMed|10508782}}, [http://www.rcsb.org/pdb/explore.do?structureId=1COZ 1COZ]
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1N1D 1N1D] (complex with CDP-glycerol) {{PubMed|10508782}}, [http://www.rcsb.org/pdb/explore.do?structureId=1COZ 1COZ]

Revision as of 14:57, 2 April 2014

  • Description: glycerol-3-phosphate cytidylyltransferase

Gene name tagD
Synonyms
Essential yes PubMed
Product glycerol-3-phosphate cytidylyltransferase
Function biosynthesis of teichoic acid
Gene expression levels in SubtiExpress: tagD
MW, pI 15 kDa, 5.672
Gene length, protein length 387 bp, 129 aa
Immediate neighbours tagE, tagA
Sequences Protein DNA DNA_with_flanks
Genetic context
TagD context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
TagD expression.png
























Categories containing this gene/protein

cell wall synthesis, biosynthesis of cell wall components, essential genes

This gene is a member of the following regulons

PhoP regulon, WalR regulon

The gene

Basic information

  • Locus tag: BSU35740

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: CTP + sn-glycerol 3-phosphate = diphosphate + CDP-glycerol (according to Swiss-Prot)
  • Protein family: cytidylyltransferase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [3]

Additional information

Expression and regulation

  • Additional information:
    • The mRNA has a long 5' leader region. This may indicate RNA-based regulation PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References