Difference between revisions of "LipC"

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* '''Description:''' phospholipase implicated in spore germination <br/><br/>
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* '''Description:''' spore coat protein, phospholipase implicated in spore germination <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
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|style="background:#ABCDEF;" align="center"| '''Product''' || spore coat phospholipase B
 
|style="background:#ABCDEF;" align="center"| '''Product''' || spore coat phospholipase B
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || spore germination
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|style="background:#ABCDEF;" align="center"|'''Function''' || spore [[germination]]
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04110 lipC]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04110 lipC]
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<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
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<br/><br/>
<br/><br/><br/><br/>
 
 
 
 
 
<br/><br/><br/><br/><br/><br/>
 
  
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
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{{SubtiWiki regulon|[[KipR regulon]]}},
 
{{SubtiWiki regulon|[[KipR regulon]]}},
 
{{SubtiWiki regulon|[[SigK regulon]]}},
 
{{SubtiWiki regulon|[[SigK regulon]]}},
{{SubtiWiki regulon|[[TnrA regulon]]}}
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{{SubtiWiki regulon|[[TnrA regulon]]}},
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{{SubtiWiki regulon|[[GerE regulon]]}}
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=The gene=
 
=The gene=
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===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
defective in L-alanine-stimulated germination {{PubMed|20057119}}
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* defective in L-alanine-stimulated germination {{PubMed|20057119}}
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=== Database entries ===
 
=== Database entries ===
  
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=== Additional information===
 
=== Additional information===
 
 
  
  
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* '''[[Localization]]:'''
 
* '''[[Localization]]:'''
** spore coat {{PubMed|17220230,20057119}}
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** spore coat (basement), localization depends on [[SpoIVA]] {{PubMed|22171814,17220230,20057119}}
  
 
=== Database entries ===
 
=== Database entries ===
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=References=
 
=References=
<pubmed> 17220230 9334321 20057119 </pubmed>
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<pubmed> 17220230 9334321 20057119 22171814</pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 16:56, 13 August 2013

  • Description: spore coat protein, phospholipase implicated in spore germination

Gene name lipC
Synonyms ycsK
Essential no
Product spore coat phospholipase B
Function spore germination
Gene expression levels in SubtiExpress: lipC
Function and regulation of this protein in SubtiPathways:
Phosphorelay
MW, pI 23 kDa, 5.839
Gene length, protein length 639 bp, 213 aa
Immediate neighbours kipR, yczI
Sequences Protein DNA DNA_with_flanks
Genetic context
YcsK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
LipC expression.png















Categories containing this gene/protein

utilization of lipids, sporulation proteins, germination

This gene is a member of the following regulons

KipR regulon, SigK regulon, TnrA regulon, GerE regulon


The gene

Basic information

  • Locus tag: BSU04110

Phenotypes of a mutant

  • defective in L-alanine-stimulated germination PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: cleaves the fatty acids at the sn-1 and sn-2 positions of phospholipids PubMed
  • Protein family: 'GDSL' lipolytic enzyme family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • lipC: expressed four hours after onset of sporulation (GerE) PubMed
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References