Difference between revisions of "PolA"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mutM]]'', ''[[phoR]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mutM]]'', ''[[phoR]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU29090 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU29090 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU29090 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU29090 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU29090 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU29090 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:polA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:polA_context.gif]]

Revision as of 10:58, 14 May 2013

  • Description: DNA polymerase I, required for repair of UV- or MMS-induced DNA damage

Gene name polA
Synonyms
Essential no
Product DNA polymerase I
Function DNA replication
Gene expression levels in SubtiExpress: polA
MW, pI 98 kDa, 4.916
Gene length, protein length 2640 bp, 880 aa
Immediate neighbours mutM, phoR
Sequences Protein DNA DNA_with_flanks
Genetic context
PolA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
PolA expression.png
























Categories containing this gene/protein

DNA repair/ recombination

This gene is a member of the following regulons

The gene

Basic information

  • Locus tag: BSU29090

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: has DNA polymerase and 5'-3' exonuclease activity, but no 3'-5' exonuclease activity PubMed
  • Protein family: DNA polymerase type-A family (according to Swiss-Prot)
  • Paralogous protein(s): YpcP, one of the two proteins has to be present for viability PubMed

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure: 1XWL (large fragment, corresponds to AA 310 to 880, Geobacillus stearothermophilus)
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Operon:
  • Sigma factor:
  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Sanae Fukushima, Mitsuhiro Itaya, Hiroaki Kato, Naotake Ogasawara, Hirofumi Yoshikawa
Reassessment of the in vivo functions of DNA polymerase I and RNase H in bacterial cell growth.
J Bacteriol: 2007, 189(23);8575-83
[PubMed:17905985] [WorldCat.org] [DOI] (I p)

Helena B Thomaides, Ella J Davison, Lisa Burston, Hazel Johnson, David R Brown, Alison C Hunt, Jeffery Errington, Lloyd Czaplewski
Essential bacterial functions encoded by gene pairs.
J Bacteriol: 2007, 189(2);591-602
[PubMed:17114254] [WorldCat.org] [DOI] (P p)

Stéphane Duigou, S Dusko Ehrlich, Philippe Noirot, Marie-Françoise Noirot-Gros
DNA polymerase I acts in translesion synthesis mediated by the Y-polymerases in Bacillus subtilis.
Mol Microbiol: 2005, 57(3);678-90
[PubMed:16045613] [WorldCat.org] [DOI] (P p)