Difference between revisions of "YofA"

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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ggt]]'', ''[[yogA]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ggt]]'', ''[[yogA]]''
 
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18420 Advanced_DNA]
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18420 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18420 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18420 DNA_with_flanks]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:yofA_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:yofA_context.gif]]

Revision as of 10:22, 14 May 2013

  • Description: transcriptional activator of ftsW at the onset of stationary phase

Gene name yofA
Synonyms ftsR
Essential no
Product transcriptional activator (LysR family)
Function control of ftsW expression
Gene expression levels in SubtiExpress: yofA
MW, pI 31 kDa, 6.164
Gene length, protein length 855 bp, 285 aa
Immediate neighbours ggt, yogA
Sequences Protein DNA DNA_with_flanks
Genetic context
YofA context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YofA expression.png















Categories containing this gene/protein

transcription factors and their control

This gene is a member of the following regulons

The YofA regulon:

The gene

Basic information

  • Locus tag: BSU18420

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • maximally expressed at the onset of stationary phase PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L Denham, Mark J Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A T Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M Devine, Anthony J Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science: 2012, 335(6072);1103-6
[PubMed:22383849] [WorldCat.org] [DOI] (I p)

Zuolei Lu, Michio Takeuchi, Tsutomu Sato
The LysR-type transcriptional regulator YofA controls cell division through the regulation of expression of ftsW in Bacillus subtilis.
J Bacteriol: 2007, 189(15);5642-51
[PubMed:17526699] [WorldCat.org] [DOI] (P p)