Difference between revisions of "RapK"

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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[ComA]] activity  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[ComA]] activity  
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU18910 rapK]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18910 rapK]
 
|-
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapK RapK]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapK RapK]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yozZ]]'', ''[[phrK]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yozZ]]'', ''[[phrK]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13783&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18910 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18910 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18910 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:rapK_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rapK_context.gif]]

Revision as of 12:59, 13 May 2013

Gene name rapK
Synonyms yobG
Essential no
Product response regulator aspartate phosphatase
Function control of ComA activity
Gene expression levels in SubtiExpress: rapK
Interactions involving this protein in SubtInteract: RapK
MW, pI 43 kDa, 5.06
Gene length, protein length 1113 bp, 371 aa
Immediate neighbours yozZ, phrK
Sequences Protein DNA Advanced_DNA
Genetic context
RapK context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RapK expression.png
























Categories containing this gene/protein

genetic competence, protein modification, transcription factors and their control, quorum sensing

This gene is a member of the following regulons

AbrB regulon, SigH regulon

The gene

Basic information

  • Locus tag: BSU18910

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: control of ComA activity PubMed
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: binding of PhrK inhibits RapK activity PubMed

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Additional publications: PubMed

Jennifer M Auchtung, Catherine A Lee, Alan D Grossman
Modulation of the ComA-dependent quorum response in Bacillus subtilis by multiple Rap proteins and Phr peptides.
J Bacteriol: 2006, 188(14);5273-85
[PubMed:16816200] [WorldCat.org] [DOI] (P p)

R S McQuade, N Comella, A D Grossman
Control of a family of phosphatase regulatory genes (phr) by the alternate sigma factor sigma-H of Bacillus subtilis.
J Bacteriol: 2001, 183(16);4905-9
[PubMed:11466295] [WorldCat.org] [DOI] (P p)