Difference between revisions of "SbcC"
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|style="background:#ABCDEF;" align="center"|'''Function''' || DNA inter-strand cross-link repair | |style="background:#ABCDEF;" align="center"|'''Function''' || DNA inter-strand cross-link repair | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU10650 sbcC] |
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SbcC SbcC] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/SbcC SbcC] | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sbcD]]'', ''[[hlpB]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sbcD]]'', ''[[hlpB]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU10650 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU10650 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU10650 Advanced_DNA] |
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Revision as of 12:30, 13 May 2013
- Description: DNA exonuclease
| Gene name | sbcC |
| Synonyms | yirY |
| Essential | no |
| Product | DNA exonuclease |
| Function | DNA inter-strand cross-link repair |
| Gene expression levels in SubtiExpress: sbcC | |
| Interactions involving this protein in SubtInteract: SbcC | |
| MW, pI | 128 kDa, 5.294 |
| Gene length, protein length | 3390 bp, 1130 aa |
| Immediate neighbours | sbcD, hlpB |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
DNA repair/ recombination, genetic competence
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU10650
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: SbcC subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: Nucleoid (Mid-cell) PubMed
Database entries
- Structure:
- UniProt: O06714
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Sigma factor:
- Regulatory mechanism:
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Peter Graumann, Freiburg University, Germany homepage
Your additional remarks
References
Reviews
Peter L Graumann, Tobias Knust
Dynamics of the bacterial SMC complex and SMC-like proteins involved in DNA repair.
Chromosome Res: 2009, 17(2);265-75
[PubMed:19308706]
[WorldCat.org]
[DOI]
(I p)
Original publications
Additional publications: PubMed
