Difference between revisions of "YydH"

From SubtiWiki
Jump to: navigation, search
Line 85: Line 85:
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''
  
* '''Interactions:''' [[YydI]]-([[YydJ]]-[[YydH]]) {{PubMed|10092453}}  
+
* '''[[SubtInteract|Interactions]]:'''
 +
** [[YydI]]-([[YydJ]]-[[YydH]]) {{PubMed|10092453}}  
  
* '''Localization:''' cell membrane {{PubMed|10092453}}
+
* '''[[Localization]]:''' cell membrane {{PubMed|10092453}}
  
 
=== Database entries ===
 
=== Database entries ===
Line 116: Line 117:
  
 
* '''Additional information:'''  
 
* '''Additional information:'''  
 +
** the amount of the mRNA is substantially decreased upon depletion of [[Rny|RNase Y]] {{PubMed|21815947}}
  
 
=Biological materials =
 
=Biological materials =
Line 136: Line 138:
  
 
=References=
 
=References=
 
+
<big>''Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J''  </big>
 +
<big>'''RNA processing in ''Bacillus subtilis'': identification of targets of the essential RNase Y.''' </big>
 +
<big>Mol Microbiol. 2011 81(6): 1459-1473. </big>
 +
[http://www.ncbi.nlm.nih.gov/pubmed/21815947 PubMed:21815947]
 
<pubmed>10092453,,17921301,15743949,17921301, </pubmed>
 
<pubmed>10092453,,17921301,15743949,17921301, </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 14:37, 20 November 2011

Gene name yydH
Synonyms
Essential no
Product ABC transporter (membrane protein)
Function control of LiaR-LiaS activity
Interactions involving this protein in SubtInteract: YydH
MW, pI 29 kDa, 9.641
Gene length, protein length 756 bp, 252 aa
Immediate neighbours yydI, yydG
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YydH context.gif
This image was kindly provided by SubtiList



Categories containing this gene/protein

ABC transporters, transcription factors and their control, membrane proteins

This gene is a member of the following regulons

AbrB regulon, Rok regulon

The gene

Basic information

  • Locus tag: BSU40160

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:
    • the amount of the mRNA is substantially decreased upon depletion of RNase Y PubMed

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Lehnik-Habrink M, Schaffer M, Mäder U, Diethmaier C, Herzberg C, Stülke J  
RNA processing in Bacillus subtilis: identification of targets of the essential RNase Y. 
Mol Microbiol. 2011 81(6): 1459-1473. 
PubMed:21815947