Difference between revisions of "YcbJ"

From SubtiWiki
Jump to: navigation, search
Line 92: Line 92:
 
* '''[[Sigma factor]]:'''  
 
* '''[[Sigma factor]]:'''  
  
* '''Regulation:''' induced by D-glucarate/galactarate ([[YcbG]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12044674 PubMed]
+
* '''Regulation:'''  
 +
** induced by D-glucarate/galactarate ([[YcbG]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12044674 PubMed]
 +
** repressed during logarithmic phase ([[AbrB]]) {{PubMed|18840696}}
  
* '''Regulatory mechanism:''' [[YcbG]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12044674 PubMed]
+
* '''Regulatory mechanism:'''  
 +
** [[YcbG]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12044674 PubMed]
 +
** AbrB: transcription repression {{PubMed|18840696}}
  
 
* '''Additional information:'''
 
* '''Additional information:'''
Line 118: Line 122:
 
=References=
 
=References=
  
<pubmed>12044674,, </pubmed>
+
<pubmed>12044674,18840696, </pubmed>
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 22:24, 11 December 2009

  • Description: similar to macrolide 2'-phosphotransferase

Gene name ycbJ
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 34 kDa, 4.565
Gene length, protein length 918 bp, 306 aa
Immediate neighbours ycbH, rtpA
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YcbJ context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU02520

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: aminoglycoside phosphotransferase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

Allison V Banse, Arnaud Chastanet, Lilah Rahn-Lee, Errett C Hobbs, Richard Losick
Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis.
Proc Natl Acad Sci U S A: 2008, 105(40);15547-52
[PubMed:18840696] [WorldCat.org] [DOI] (I p)

Shigeo Hosoya, Kunio Yamane, Michio Takeuchi, Tsutomu Sato
Identification and characterization of the Bacillus subtilis D-glucarate/galactarate utilization operon ycbCDEFGHJ.
FEMS Microbiol Lett: 2002, 210(2);193-9
[PubMed:12044674] [WorldCat.org] [DOI] (P p)