Difference between revisions of "YvmC"
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
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* '''Effectors of protein activity:''' | * '''Effectors of protein activity:''' | ||
| − | * '''Interactions:''' | + | * '''[[SubtInteract|Interactions]]:''' |
| − | * '''Localization:''' | + | * '''[[Localization]]:''' |
=== Database entries === | === Database entries === | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvmC_3603821_3604567_-1 yvmC] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvmC_3603821_3604567_-1 yvmC] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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=References= | =References= | ||
| − | + | <pubmed> 19430487 420491 220817675,21325056 </pubmed> | |
| − | <pubmed> 19430487 | ||
[http://www.liebertonline.com/doi/pdf/10.1089/ind.2006.2.66 additional paper] | [http://www.liebertonline.com/doi/pdf/10.1089/ind.2006.2.66 additional paper] | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 21:27, 18 June 2013
- Description: cyclodipeptide synthase
| Gene name | yvmC |
| Synonyms | |
| Essential | no |
| Product | cyclodipeptide synthase |
| Function | biosynthesis of the extracellular iron chelate pulcherrimin |
| Gene expression levels in SubtiExpress: yvmC | |
| MW, pI | 28 kDa, 6.612 |
| Gene length, protein length | 744 bp, 248 aa |
| Immediate neighbours | cypX, yvmB |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
br/>
Categories containing this gene/protein
acquisition of iron, iron metabolism
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU35070
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- synthesis of the cyclic dipeptide cyclo-L-leucyl-L-leucyl with the corresponding charged tRNAs as substrates in an ATP-dependent manner PubMed
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- UniProt: O34351
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Luc Bonnefond, Taiga Arai, Yuriko Sakaguchi, Tsutomu Suzuki, Ryuichiro Ishitani, Osamu Nureki
Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog.
Proc Natl Acad Sci U S A: 2011, 108(10);3912-7
[PubMed:21325056]
[WorldCat.org]
[DOI]
(I p)
Muriel Gondry, Ludovic Sauguet, Pascal Belin, Robert Thai, Rachel Amouroux, Carine Tellier, Karine Tuphile, Mickaël Jacquet, Sandrine Braud, Marie Courçon, Cédric Masson, Steven Dubois, Sylvie Lautru, Alain Lecoq, Shin-ichi Hashimoto, Roger Genet, Jean-Luc Pernodet
Cyclodipeptide synthases are a family of tRNA-dependent peptide bond-forming enzymes.
Nat Chem Biol: 2009, 5(6);414-20
[PubMed:19430487]
[WorldCat.org]
[DOI]
(I p)
S H Harrison
The surgical management of the arthritic hand.
Ann R Coll Surg Engl: 1979, 61(1);17-28
[PubMed:420491]
[WorldCat.org]
(P p)
