ywjD

ywjD
168

[wiki|sporulation] specific UV-damage-endonuclease

locus
BSU_37200
Molecular weight
36.74 kDa
pI
8.99
Protein length
Gene length
function
protection of developing and dormant spores against UV DNA damage
product
UV-damage-endonuclease
essential
no
synonyms
ywjD

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG4294 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,817,863  3,818,825
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The protein
Protein family
uve1/UvsE family (single member, according to UniProt)
Structure
[PDB|3TC3] (from Sulfolobus acidocaldarius, 29% identity) [pubmed|23221644]
[AF|P45864]
Expression and Regulation
Operons
genes
[gene|B63AAF0D3277FD776944A09D2546F3E48C8716AD|ywjE]-[gene|611B441B84C2179B7A19745461CA1725DF2F82CD|ywjD]
description
[Pubmed|22383849]
additional information
there is an antisense transcript for [gene|B63AAF0D3277FD776944A09D2546F3E48C8716AD|ywjE] ([gene|22198D5928526CC964233355352D085D0A15DEE8|S1445]) [PubMed|22383849]
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[gene|B63AAF0D3277FD776944A09D2546F3E48C8716AD|ywjE]→[gene|611B441B84C2179B7A19745461CA1725DF2F82CD|ywjD]

2024-03-18 00:56:18

Jstuelk

44

2e23d1b56c76630be8997c574f66bb92c2eedf90

B6B03A701817C968B40350DF013554900584E9F9

Biological materials
Mutant
MGNA-B660 (ywjD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1659 NBRP B. subtilis, Japan]
BKE37200 ([gene|611B441B84C2179B7A19745461CA1725DF2F82CD|ywjD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE37200 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATAGGAACTCTCCTTTATA,  downstream forward: _UP4_TAAATGTGCAAAAATAGGTT
BKK37200 ([gene|611B441B84C2179B7A19745461CA1725DF2F82CD|ywjD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK37200 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATAGGAACTCTCCTTTATA,  downstream forward: _UP4_TAAATGTGCAAAAATAGGTT
References
22383849,22961846,23221644,30096406

611B441B84C2179B7A19745461CA1725DF2F82CD

Page visits: 3563

Time of last update: 2024-03-29 06:29:30

Author of last update: Melvin.boenninger