yrdR

168

unknown

locus: BSU_26620

Molecular weight: 35.76 kDa

pI: 9.97

Protein length: 321 aa

Gene length: 966 bp

function: unknown

product: unknown

essential: no

ec: null

synonyms: yrdR

List of homologs in different organisms, belongs to COG0697 (Galperin et al., 2021)

Gene

Coordinates: 2,720,687 → 2,721,652

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The protein

Protein family

• [wiki|EamA transporter family] (according to UniProt)

[wiki|Domains]

• 2 [wiki|EamA domain]s (aa 18-146, aa 175-300) (according to UniProt)

Structure

• [AF|O07086]

[wiki|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|F47A2C0A7478485BDAF90FA873F4B1D1F7C74004|yrdR]-[gene|4E42C126368C8995971518F33933D39FFD52BF64|yrzO]

  description: [pubmed|22383849]

  sigma factors

  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|sigF]: sigma factor, [pubmed|30782632], in [regulon|protein:CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|sigF regulon]
  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|sigG]: sigma factor, [pubmed|30782632], in [regulon|protein:5F24258282F3166B7696B9E9ABC1706E4D06C944|sigG regulon]

Biological materials

Mutant

• MGNA-A860 (yrdR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/860 NBRP B. subtilis, Japan]
• BKE26620 (Δ[gene|F47A2C0A7478485BDAF90FA873F4B1D1F7C74004|yrdR]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE26620 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTGAATTCCCCTCCTTTT,  downstream forward: _UP4_ACTTAGACAGTGGGGGATTT
• BKK26620 (Δ[gene|F47A2C0A7478485BDAF90FA873F4B1D1F7C74004|yrdR]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK26620 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTGAATTCCCCTCCTTTT,  downstream forward: _UP4_ACTTAGACAGTGGGGGATTT