yrdC

168

unknown

locus: BSU_26760

Molecular weight: 21.10 kDa

pI: 5.07

Protein length: 187 aa

Gene length: 564 bp

function: unknown

product: unknown

essential: no

synonyms: yrdC

List of homologs in different organisms, belongs to COG1335 (Galperin et al., 2021)

Gene

Coordinates: 2,732,980 → 2,733,543

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The protein

Protein family

• [wiki|Isochorismatase family] (according to UniProt)

Structure

• [PDB|3MCW] (from Chromobacterium violaceum, 36% identity)
• [AF|O07081]

Paralogous protein(s)

• [protein|5CE3A1F611563E09B3C4657E56397F44F39209B3|yddQ]

Expression and Regulation

Operons

• genes: [gene|CF663A76026F915FFE38EE924C7E354A49607F90|yrdC]

  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-B511 (yrdC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1510 NBRP B. subtilis, Japan]
• BKE26760 (Δ[gene|CF663A76026F915FFE38EE924C7E354A49607F90|yrdC]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE26760 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CACAAGATACCCTCCTACGT,  downstream forward: _UP4_TGATGAAAAACATTTTGGCA
• BKK26760 (Δ[gene|CF663A76026F915FFE38EE924C7E354A49607F90|yrdC]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK26760 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CACAAGATACCCTCCTACGT,  downstream forward: _UP4_TGATGAAAAACATTTTGGCA

References

• 27766092