ykvN

168

[wiki|MarR family|MarR/DUF24 family] transcription regulator

locus: BSU_13760

Molecular weight: 13.43 kDa

pI: 6.57

Protein length: 118 aa

Gene length: 357 bp

function: unknown

product: [wiki|MarR family|MarR/DUF24 family] transcription regulator

essential: no

synonyms: ykvN

List of homologs in different organisms, belongs to COG1733 (Galperin et al., 2021)

Gene

Coordinates: 1,442,347 → 1,442,703

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The protein

Protein family

• [wiki|MarR family|MarR/DUF24 family]

[wiki|Domains]

• [wiki|HTH hxlR-type domain] (aa 6-104) (according to UniProt)

Structure

• [PDB|4A5M] ([protein|91085DA5E71B88E533D2E1D1BFB53E908116C6AA|hypR], 55% identity) [pubmed|22238377]
• [AF|O31679]

Paralogous protein(s)

• [protein|D9A187961CFB9496A6712E9E48AAD384357A3E1C|hxlR], [protein|E757C4B329A99E3D0C70C77437DF4DDA300CA5E7|ydzF], [protein|51B1913B59C1876CCED4A88414797B3A22BE4E3C|ydeP], [protein|91085DA5E71B88E533D2E1D1BFB53E908116C6AA|hypR], [protein|1E74F0557FF9ECB404B6544831F4E0A162473423|ytcD], [protein|73AFDF65BE89C0E2CC59AF2AF64C29BD99D785DF|yodB]

Expression and Regulation

Operons

• genes: [gene|C57DDC9710CB557179B062F9C5D786DB02A3B5FC|ykvN]

  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-A791 (ykvN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/791 NBRP B. subtilis, Japan]
• BKE13760 (Δ[gene|C57DDC9710CB557179B062F9C5D786DB02A3B5FC|ykvN]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE13760 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTCTAAAGCTCTCCATT,  downstream forward: _UP4_TAGGATTGATGTAGCTGCTG
• BKK13760 (Δ[gene|C57DDC9710CB557179B062F9C5D786DB02A3B5FC|ykvN]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK13760 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTCTAAAGCTCTCCATT,  downstream forward: _UP4_TAGGATTGATGTAGCTGCTG

References

Research papers

• 22238377