ykuK

ykuK
168

unknown

locus
BSU_14110
Molecular weight
19.34 kDa
pI
6.42
Protein length
Gene length
function
unknown
product
unknown, distantly related to RNase H
essential
no
synonyms
ykuK

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1978 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,484,466  1,484,984
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The protein
[wiki|Domains]
[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?ascbin=8&maxaln=10&seltype=2&uid=pfam04308 DUF458]
Structure
[PDB|2E3U] (from Pyrococcus horikoshii, 24% identity) [pubmed|17654551]
[AF|O34776]
Expression and Regulation
Operons
genes
[gene|A26502ADAC214D45A8F7F394587B0BDFBE7AF28E|ykuJ]-[gene|7FD784C885605F7FD27898BC9E83C28F21BE0E9D|ykuK]-[gene|899FF5BEE5D3F01778A0175E293EDBBDEB25717D|abbA]-[gene|90AFF93D6E7BC993B2773C12EE400C80A87A4831|darB]-[gene|FE15A41A58A8177280817CA3825764C39185021A|ccpC]
description
[Pubmed|16395550]
regulation
expressed under conditions that trigger sporulation ([wiki|Spo0A]) [Pubmed|14651647]
regulatory mechanism
[protein|2C54FE2ADC82FF414D732018C90649D477A925AD|spo0A]: activation, by [protein|2C54FE2ADC82FF414D732018C90649D477A925AD|spo0A]~P [Pubmed|18840696,14651647], in [regulon|protein:2C54FE2ADC82FF414D732018C90649D477A925AD|spo0A regulon]
[protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|ccpA]: repression, [Pubmed|16395550,12850135], in [regulon|protein:E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|ccpA regulon]
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[gene|A26502ADAC214D45A8F7F394587B0BDFBE7AF28E|ykuJ]→[gene|FE15A41A58A8177280817CA3825764C39185021A|ccpC]

2024-03-29 07:46:35

ghost

112

c31a71bd4220fdbe189c19124eb835899db4473b

DE202F49BDBFA88FBD49A4685EB1CB8595CFCE08

Biological materials
Mutant
MGNA-A772 (ykuK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/772 NBRP B. subtilis, Japan]
GP214 (deletion of ''[gene|A26502ADAC214D45A8F7F394587B0BDFBE7AF28E|ykuJ]-[gene|7FD784C885605F7FD27898BC9E83C28F21BE0E9D|ykuK]-[gene|899FF5BEE5D3F01778A0175E293EDBBDEB25717D|abbA]-[gene|90AFF93D6E7BC993B2773C12EE400C80A87A4831|darB]'', replaced by ''aphA3''), available in [wiki|Jörg Stülke]'s lab
BKE14110 ([gene|7FD784C885605F7FD27898BC9E83C28F21BE0E9D|ykuK]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE14110 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCACGACACTCCTTTTCA,  downstream forward: _UP4_TAATTTGGCTGAAAAAGCCA
BKK14110 ([gene|7FD784C885605F7FD27898BC9E83C28F21BE0E9D|ykuK]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK14110 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCACGACACTCCTTTTCA,  downstream forward: _UP4_TAATTTGGCTGAAAAAGCCA
lacZ fusion
pGP709 (in [wiki|pAC5]), available in [wiki|Jörg Stülke]'s lab, pGP713 (in [wiki|pAC6]), available in [wiki|Jörg Stülke]'s lab
References
Reviews
36882621
Original Publications
16395550,16165328,17654551

7FD784C885605F7FD27898BC9E83C28F21BE0E9D

Page visits: 1994

Time of last update: 2024-03-29 12:02:49

Author of last update: Jstuelk