yjcM

168

unknown, similar to cell wall hydrolase (amides)

locus: BSU_11910

Molecular weight: 46.41 kDa

pI: 9.11

Protein length: 409 aa

Gene length: 1230 bp

function: unknown

product: unknown

essential: no

synonyms: yjcM

List of homologs in different organisms, belongs to COG5890 (Galperin et al., 2021)

Gene

Coordinates: 1,263,702 → 1,264,931

Advertisement

The protein

Protein family

• Amidase 6 family (with [protein|506BD8F55C235CCCF5045073AEC93D8B1E4FB8DF|yhbB], according to UniProt)

Structure

• [AF|O31635]

[wiki|Localization]

• extracellular (signal peptide) [Pubmed|18957862]

Expression and Regulation

Operons

• genes: [gene|E3603BC23B04BA806F008EF13C6CDA23ADDAC7D8|yjcM]

  description: [pubmed|22383849]

  regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|abrB]: repression, [Pubmed|20817675], in [regulon|protein:E5110D9C36E8C55AFD1419987B14A53232165F20|abrB regulon]

  sigma factors

  • [protein|7024E4162A6D827069F882FDEACA696EBC05DD40|sigD]: sigma factor, [Pubmed|26577401], in [regulon|protein:7024E4162A6D827069F882FDEACA696EBC05DD40|sigD regulon]

Biological materials

Mutant

• MGNA-B300 (yjcM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1299 NBRP B. subtilis, Japan]
• BKE11910 (Δ[gene|E3603BC23B04BA806F008EF13C6CDA23ADDAC7D8|yjcM]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE11910 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATACGAAACCTCCAATAAA,  downstream forward: _UP4_TAATAAATTGATACTAAATC
• BKK11910 (Δ[gene|E3603BC23B04BA806F008EF13C6CDA23ADDAC7D8|yjcM]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK11910 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATACGAAACCTCCAATAAA,  downstream forward: _UP4_TAATAAATTGATACTAAATC

References

• 18957862,20817675,26577401