yhdW

yhdW
168

similar to glycerophosphodiester phosphodiesterase

locus
BSU_09620
Molecular weight
27.33 kDa
pI
9.54
Protein length
Gene length
function
unknown
product
unknown
essential
no
synonyms
yhdW

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0584 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,037,688  1,038,419
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The protein
Catalyzed reaction/ biological activity
sn-glycero-3-phosphoester + H2O --> alcohol + H+ + sn-glycerol 3-phosphate (according to UniProt)
Protein family
glycerophosphoryl diester phosphodiesterase family (with [protein|E9BEF368F8E55888AD4849E8906E517831A882DF|glpQ], according to UniProt)
[wiki|Domains]
GP-PDE domain (aa 1-238) (according to UniProt)
Structure
[PDB|5T9B] ([protein|E9BEF368F8E55888AD4849E8906E517831A882DF|glpQ], 38% identity) [pubmed|27780866]
[AF|O07592]
Paralogous protein(s)
[protein|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK], [protein|E9BEF368F8E55888AD4849E8906E517831A882DF|glpQ]
Expression and Regulation
Operons
genes
[gene|04CACAF4F786090AB67D7C606C944F07B7A7FE55|yhdW]-[gene|BD1C4D9E6E8960DF77EE1571A637929C2D8C4A28|yhdV]-[gene|2F86A2FF36ED00DB0A9A91B064EBD095F5E759ED|fluC]
description
[Pubmed|22383849]
Open in new tab

[gene|04CACAF4F786090AB67D7C606C944F07B7A7FE55|yhdW]→[gene|2F86A2FF36ED00DB0A9A91B064EBD095F5E759ED|fluC]

2024-02-12 10:07:09

Jstuelk

31

e949606f7fb4fef10336881f989750325fd2e9fd

9315E1988E88DBCB0E6AA1EDB2B69897632E0447

Biological materials
Mutant
MGNA-B487 (yhdW::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1486 NBRP B. subtilis, Japan]
BKE09620 ([gene|04CACAF4F786090AB67D7C606C944F07B7A7FE55|yhdW]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE09620 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAAGCTAAGTCAGCTCCTCG,  downstream forward: _UP4_GATTTCATCATAAAGGATGG
BKK09620 ([gene|04CACAF4F786090AB67D7C606C944F07B7A7FE55|yhdW]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK09620 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAAGCTAAGTCAGCTCCTCG,  downstream forward: _UP4_GATTTCATCATAAAGGATGG
References
Research papers
27780866

04CACAF4F786090AB67D7C606C944F07B7A7FE55

Page visits: 1579

Time of last update: 2024-03-29 05:24:21

Author of last update: Melvin.boenninger