ydhC

168

similar to transcriptional regulator ([wiki|GntR family])

locus: BSU_05700

Molecular weight: 26.25 kDa

pI: 5.79

Protein length: 224 aa

Gene length: 675 bp

function: unknown

product: transcriptional regulator ([wiki|GntR family])

essential: no

synonyms: ydhC

List of homologs in different organisms, belongs to COG1802 (Galperin et al., 2021)

Gene

Coordinates: 615,871 → 616,545

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The protein

Protein family

• [wiki|GntR family] of transcription factors

[wiki|Domains]

• [wiki|HTH gntR-type domain] (aa 10-77) (according to UniProt)

Structure

• [PDB|6AZ6] ([protein|1C566E54F8EF1A17A365FC49DFDA452AC5D0CA64|gntR] from Streptococcus agalactiae, 30% identity) [pubmed|29269393]
• [AF|O05494]

Expression and Regulation

Operons

• genes: [gene|B585209B07593C1078ED6DA1741B808E13B0B625|ydhC]

  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C178 (ydhC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2176 NBRP B. subtilis, Japan]
• BKE05700 (Δ[gene|B585209B07593C1078ED6DA1741B808E13B0B625|ydhC]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05700 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATATATAATACCTCTTTTG,  downstream forward: _UP4_TGATTTGTATGATCCGGTAC
• BKK05700 (Δ[gene|B585209B07593C1078ED6DA1741B808E13B0B625|ydhC]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05700 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATATATAATACCTCTTTTG,  downstream forward: _UP4_TGATTTGTATGATCCGGTAC

References

• 23504016,29269393