ydfR

168

unknown

locus: BSU_05530

Molecular weight: 25.02 kDa

pI: 10.37

Protein length: 225 aa

Gene length: 678 bp

function: unknown

product: unknown

essential: no

synonyms: ydfR

List of homologs in different organisms, belongs to COG2323 (Galperin et al., 2021)

Gene

Coordinates: 600,229  600,906

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The protein

Protein family

• [wiki|UPF0702 family] (according to UniProt)

Structure

• [AF|P96696]

[wiki|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|65EAA88A18FD7E11ED7ACAF8026E088ACD9EA303|ydfR]

  description: [Pubmed|16497325]

  regulation

  • expressed during sporulation in the forespore ([protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|sigG]) [Pubmed|16497325]
  • strongly expressed during oligotrophic growth [pubmed|30792386]

  sigma factors

  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|sigG]: sigma factor, [Pubmed|16497325], in [regulon|protein:5F24258282F3166B7696B9E9ABC1706E4D06C944|sigG regulon]

Biological materials

Mutant

• MGNA-C155 (ydfR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2153 NBRP B. subtilis, Japan]
• BKE05530 ([gene|65EAA88A18FD7E11ED7ACAF8026E088ACD9EA303|ydfR]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05530 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTCTGTCCTGAACCGAAC,  downstream forward: _UP4_TAACAAAAGGCGCTTGTGGC
• BKK05530 ([gene|65EAA88A18FD7E11ED7ACAF8026E088ACD9EA303|ydfR]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05530 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTCTGTCCTGAACCGAAC,  downstream forward: _UP4_TAACAAAAGGCGCTTGTGGC

References

• 16497325,30792386