ydfF

168

similar to transcriptional regulator ([wiki|ArsR family])

locus: BSU_05390

Molecular weight: 25.47 kDa

pI: 10.02

Protein length: 226 aa

Gene length: 681 bp

function: unknown

product: unknown

essential: no

synonyms: ydfF

List of homologs in different organisms, belongs to COG0640 (Galperin et al., 2021)

Gene

Coordinates: 585,868  586,548

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The protein

Protein family

• [wiki|ArsR family]

[wiki|Domains]

• [wiki|HTH arsR-type domain] (aa 1-92) (according to UniProt)

Structure

• [PDB|2JSC] (from Mycobacterium tuberculosis, corresponds to aa 5 ... 87, 34% identity) [pubmed|17599915]
• [AF|P96683]

Expression and Regulation

Operons

• genes: [gene|0405FF18AEB2DC3632CFFF25E82EFA08D0A48F57|ydfF]

  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-C146 (ydfF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2144 NBRP B. subtilis, Japan]
• BKE05390 ([gene|0405FF18AEB2DC3632CFFF25E82EFA08D0A48F57|ydfF]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05390 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGATTTTCCTCCTTACAT,  downstream forward: _UP4_TAGGATTTTGAAGCGGAAAC
• BKK05390 ([gene|0405FF18AEB2DC3632CFFF25E82EFA08D0A48F57|ydfF]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05390 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGATTTTCCTCCTTACAT,  downstream forward: _UP4_TAGGATTTTGAAGCGGAAAC

References

• 23504016,17599915