ydeB

168

similar to transcriptional regulator

locus: BSU_05130

Molecular weight: 17.60 kDa

pI: 7.33

Protein length: 153 aa

Gene length: 462 bp

function: unknown

product: unknown

essential: no

synonyms: ydeB

List of homologs in different organisms, belongs to COG1329 (Galperin et al., 2021)

Gene

Coordinates: 560,151  560,612

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The protein

Protein family

• CarD family (single member, according to UniProt)

Structure

• [PDB|4KBM] (from Mycobacterium tuberculosis, 35%) [pubmed|24055315]
• [AF|P96659]

Expression and Regulation

Operons

• genes: [gene|5251F15ECCB6043F1ED3D9AA1C2BB023FBA2D3A6|ydeB]

  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-C129 (ydeB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2127 NBRP B. subtilis, Japan]
• BKE05130 ([gene|5251F15ECCB6043F1ED3D9AA1C2BB023FBA2D3A6|ydeB]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05130 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATATCATCCACCTCCATAT,  downstream forward: _UP4_TAGATACATCCCAAAAGATA
• BKK05130 ([gene|5251F15ECCB6043F1ED3D9AA1C2BB023FBA2D3A6|ydeB]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05130 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATATCATCCACCTCCATAT,  downstream forward: _UP4_TAGATACATCCCAAAAGATA

References

• 23543716,24055315