ycgR

168

unknown

locus: BSU_03250

Molecular weight: 31.78 kDa

pI: 9.5

Protein length: 294 aa

Gene length: 885 bp

function: unknown

product: unknown

essential: no

ec: null

synonyms: ycgR

List of homologs in different organisms, belongs to COG0701 (Galperin et al., 2021)

Gene

Coordinates: 350,858  351,742

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The protein

Protein family

• UPF0718 family (single member, according to UniProt)

Structure

• [AF|P94395]

[wiki|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|51EF3C9A48FA7367576656F5E79D38D1B56BF6A5|ycgR]-[gene|99C8AA68035A9580FA3145ABE66F4DD63CDD6AE8|ycgQ]

  description: [pubmed|22383849]

  regulation

  • expression is reduced in a [[SigV]] mutant [Pubmed|21926231]

  sigma factors

  • [protein|081DF3EE9FA56209D648C7677188C61CE3AA8E41|sigM]: sigma factor, [Pubmed|18179421], in [regulon|protein:081DF3EE9FA56209D648C7677188C61CE3AA8E41|sigM regulon]
  • [protein|D04629D798E458AD538809BB2B150B7FA81D2C7E|sigV]: sigma factor, [pubmed|], in [regulon|protein:D04629D798E458AD538809BB2B150B7FA81D2C7E|sigV regulon]

• genes: [gene|1AA67AD33622538F7BAD64B54FAE6FD8103BF9BE|ycgS]-[gene|51EF3C9A48FA7367576656F5E79D38D1B56BF6A5|ycgR]-[gene|99C8AA68035A9580FA3145ABE66F4DD63CDD6AE8|ycgQ]

  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-B996 (ycgR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1995 NBRP B. subtilis, Japan]
• BKE03250 ([gene|51EF3C9A48FA7367576656F5E79D38D1B56BF6A5|ycgR]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE03250 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CACAATAAAACCTCCGCTCA,  downstream forward: _UP4_TCACTACTGGTAAAGGGGTG
• BKK03250 ([gene|51EF3C9A48FA7367576656F5E79D38D1B56BF6A5|ycgR]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK03250 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CACAATAAAACCTCCGCTCA,  downstream forward: _UP4_TCACTACTGGTAAAGGGGTG