cdd

cdd
168

cytidine deaminase

locus
BSU_25300
Molecular weight
14.71 kDa
pI
4.7
Protein length
Gene length
function
pyrimidine interconversion
product
cytidine deaminase
essential
no
ec
3.5.4.5
synonyms
cdd

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0295 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
2,610,927  2,611,337
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The protein
Catalyzed reaction/ biological activity
cytidine + H+ + H2O --> NH4+ + uridine (according to UniProt)
2'-deoxycytidine + H+ + H2O --> 2'-deoxyuridine + NH4+ (according to UniProt)
Protein family
[wiki|Cytidine and deoxycytidylate deaminase family] (according to UniProt)
[wiki|Domains]
[wiki|CMP/dCMP-type deaminase domain] (aa 1–128) (according to UniProt)
[wiki|Cofactors]
Zn2+ [Pubmed|10891079]
Structure
[PDB|1JTK] (complex with inhibitor) [Pubmed|11851403]
[PDB|1UWZ] (with Arg56Ala substitution) [Pubmed|15147186]
[PDB|1UX0] (with Arg56Gln substitution) [Pubmed|15147186]
[PDB|1UX1] (with Cys53His and Arg56Gln substitutions) [Pubmed|15147186]
[AF|P19079]
Expression and Regulation
Operons
genes
[gene|0E9E9615CE056BEA2B65C494D946EB45F42A3064|cdd]-[gene|CB68B3393CA7862C45C624AF7B1ADD188243A01F|era]-[gene|33FBC31E8C24177137B0BDD8B46C1AFFD7F7B038|yqzL]-[gene|80E6F156764FF30300D034EE6FB44F2DB8338AF3|recO]
description
[Pubmed|22383849]
expression
expression is increased upon depletion of depletion of tRNA maturation factors [gene|57A79AAF00243B5E058FA901D43AA7B55CA33F63|rnpB] or [gene|C40C5D35ED53D343C8200248FCCB010BAB388054|rnz] [pubmed|36840557]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|6330116], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
[protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB]: sigma factor, [Pubmed|6330116], in [regulon|protein:580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB regulon]
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[gene|0E9E9615CE056BEA2B65C494D946EB45F42A3064|cdd]→[gene|80E6F156764FF30300D034EE6FB44F2DB8338AF3|recO]

2024-03-29 02:18:18

Jstuelk

53

F5B4B68A066EAD6341E5A2A464B577EB9CEAEDD4

CB199ECFB0BAFE3DBDF1FFE046AD4EA2F93B5339

Biological materials
Mutant
BKE25300 ([gene|0E9E9615CE056BEA2B65C494D946EB45F42A3064|cdd]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE25300 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTGTACATTCCTCTCTT,  downstream forward: _UP4_GGCGCATTTTCATCGGAGGA
BKK25300 ([gene|0E9E9615CE056BEA2B65C494D946EB45F42A3064|cdd]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK25300 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTGTACATTCCTCTCTT,  downstream forward: _UP4_GGCGCATTTTCATCGGAGGA
References
10891079,10493793,11851403,15147186,2526291,10217788,6330116

0E9E9615CE056BEA2B65C494D946EB45F42A3064

Page visits: 2929

Time of last update: 2024-03-28 20:14:17

Author of last update: Melvin.boenninger